PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g103920.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 162aa    MW: 17292.3 Da    PI: 8.7443
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g103920.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2491.5e-15103153155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++ykGVr+++ +g+W+AeI+dps+   ++r +lg f tae+Aa+ +  a+ ++ g
  Csa11g103920.1 103 KKYKGVRRKP-SGKWAAEIWDPST---KARKWLGAFPTAEMAARVYNDAAAEIVG 153
                     59*****888.7*********965...5*******************99998866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.84E-24103157No hitNo description
PfamPF008471.4E-8104152IPR001471AP2/ERF domain
PROSITE profilePS5103219.559104161IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-15104155IPR016177DNA-binding domain
SMARTSM003802.9E-21104161IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-20104155IPR001471AP2/ERF domain
PRINTSPR003671.0E-6105116IPR001471AP2/ERF domain
PRINTSPR003671.0E-6127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MNSSKTDCSE NVLSNDQNEN VTAVASPPPP SSSYLTRDQE HEIMVSALRQ VISNSGGHTS  60
SSNLIAAEAA LPPPDAGPCP LCGVTGCYGC TFQRNHGEIR KEKKYKGVRR KPSGKWAAEI  120
WDPSTKARKW LGAFPTAEMA ARVYNDAAAE IVGRTSARRG T*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00594DAPTransfer from AT5G67000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g103920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010444706.11e-118PREDICTED: ethylene-responsive transcription factor ERF122-like
SwissprotQ38Q402e-77EF122_ARATH; Ethylene-responsive transcription factor ERF122
TrEMBLR0F0667e-86R0F066_9BRAS; Uncharacterized protein
STRINGXP_010444706.11e-117(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67000.19e-76ERF family protein