 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Csa11g103760.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
AP2 |
| Protein Properties |
Length: 364aa MW: 41048.5 Da PI: 8.426 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa11g103760.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 54 | 4.1e-17 | 103 | 152 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g
Csa11g103760.1 103 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 152
78*******************......55************************997 PP
|
| 2 | AP2 | 37 | 8.6e-12 | 195 | 252 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng....kr.krfslgkfgtaeeAakaaiaarkkleg 55
s+++GV+ +k grW++++ + + + + +++lg f+t+ eAa+a+++a+ k +g
Csa11g103760.1 195 SKFRGVTLHK-CGRWESRLGQFLN-KkynyFKvLYVYLGLFDTEIEAARAYDKAAIKCNG 252
79********.7******777544.34556446**********99**********99776 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 364 aa
Download sequence Send
to blast |
MWNLNDSPDH HEASDSRGNR VGHVSNYMSQ STTWVSSVPP VTRNFFPSQV MEPGVREIYG 60
SDFNRSQSGG KSDPSGSGRP DELAPEISPP LKKSRRGPRS RSSQYRGVTF YRRTGRWESH 120
IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF RGVDADINFD IEDYVDDLKQ MGNLTKEEFM 180
HVLRRQSTGF PRGSSKFRGV TLHKCGRWES RLGQFLNKKY NYFKVLYVYL GLFDTEIEAA 240
RAYDKAAIKC NGKDAVTNFD PKVYEQEELI SPELKWNDYN LDLSLGESNS EELGFKSDIT 300
SLTNRIRDEE RLLGSDLSLA MTTTAVRSDG GGSRVGMAAS SGFSHPSSPW HHPTPNNFHF 360
FRH*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). May regulate negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699, ECO:0000269|PubMed:15988559}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK176145 | 0.0 | AK176145.1 Arabidopsis thaliana mRNA for floral homeotic protein apetala2-like, complete cds, clone: RAFL22-96-G17. |
| GenBank | AY088238 | 0.0 | AY088238.1 Arabidopsis thaliana clone 4623 mRNA, complete sequence. |
| GenBank | BT029206 | 0.0 | BT029206.1 Arabidopsis thaliana At5g67180 mRNA, complete cds. |
