PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

ERF

Protein Properties

Length: 185aa MW: 21026.2 Da PI: 5.9253

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g103740.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.3	3.9e-18	20	69	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykG+r +k +g+WvAeIr+p +kr r +lg++ t+e Aa+a++ a +l+g Csa11g103740.1 20 PYKGIRMRK-WGKWVAEIREP---NKRSRLWLGSYSTPEAAARAYDTAVFYLRG 69 59***99.******9...336***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.5E-30	20	78	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.879	20	77	IPR001471	AP2/ERF domain
SMART	SM00380	2.2E-39	20	83	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.75E-21	21	78	IPR016177	DNA-binding domain
PRINTS	PR00367	8.4E-9	21	32	IPR001471	AP2/ERF domain
CDD	cd00018	1.27E-26	21	79	No hit	No description
Pfam	PF00847	6.2E-12	21	69	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.4E-9	43	59	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MDGGAVADVA VAGTRKRERP YKGIRMRKWG KWVAEIREPN KRSRLWLGSY STPEAAARAY 60 DTAVFYLRGP SARLNFPELL PREKFSDEDM SAATIRKKAT EVGAQVDALG TAVQNNRHRV 120 FGQNIDSDDD KKNFHRNYQN GEEEEDDQEE DDKGLKSGGR FLDRVDLNKL PDPESSDEEW 180 KSRY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	9e-15	21	77	6	63	ATERF1
3gcc_A	9e-15	21	77	6	63	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00595	DAP	Transfer from AT5G67190	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g103740.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB020742	0.0	AB020742.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21H1.
GenBank	BT025744	0.0	BT025744.1 Arabidopsis thaliana At5g67190 mRNA, complete cds.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBank	DQ447114	0.0	DQ447114.1 Arabidopsis thaliana clone pENTR221-At5g67190 AP2 domain-containing transcription factor (At5g67190) mRNA, complete cds.
GenBank	DQ653394	0.0	DQ653394.1 Arabidopsis thaliana clone 0000016550_0000011550 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010444682.1	1e-133	PREDICTED: ethylene-responsive transcription factor ERF010
Swissprot	Q9FH94	1e-113	ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBL	D7MKS3	1e-112	D7MKS3_ARALL; Uncharacterized protein
TrEMBL	R0EV51	1e-112	R0EV51_9BRAS; Uncharacterized protein
STRING	XP_010444682.1	1e-133	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67190.1	1e-107	DREB and EAR motif protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]