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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g103130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bZIP | ||||||||
Protein Properties | Length: 206aa MW: 23843.1 Da PI: 10.6524 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 29.3 | 1.9e-09 | 86 | 147 | 1 | 62 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 +k+++r +rk +NR +A+rsR +K++ +e + k k+L+ eN++L ++ +++ +k+e Csa11g103130.1 86 DKDDRRKKRKLSNRKSAQRSRIKKQKHLEDVRSKLKQLKFENRELDNRRRYVLYHCEHVKME 147 6899***************************************9998877777777777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.3E-8 | 81 | 133 | No hit | No description |
SMART | SM00338 | 6.4E-9 | 86 | 150 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.1E-6 | 87 | 148 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.887 | 88 | 151 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.95E-8 | 90 | 137 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 93 | 108 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 5.09E-10 | 96 | 130 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MSTISPVLSS EPVLSNQVPA WETGFNPWDT SDHFSIFSSP VSPIEVNPGL DKTNPSPIQN 60 QRYSSPGFKD QQPLKNPTGS NVVSSDKDDR RKKRKLSNRK SAQRSRIKKQ KHLEDVRSKL 120 KQLKFENREL DNRRRYVLYH CEHVKMENYR LRLEHHALHE KLLNLRQALV MRQIQQNSTC 180 ATWSCVNSTV VTVNRNPSMM RDHVI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 88 | 95 | DRRKKRKL |
2 | 89 | 110 | RRKKRKLSNRKSAQRSRIKKQK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g103130.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010484440.1 | 1e-136 | PREDICTED: basic leucine zipper 43-like | ||||
TrEMBL | R0GTW0 | 1e-102 | R0GTW0_9BRAS; Uncharacterized protein | ||||
STRING | XP_010484440.1 | 1e-135 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3338 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49760.1 | 3e-40 | basic leucine-zipper 5 |