PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

AP2

Protein Properties

Length: 514aa MW: 57217.1 Da PI: 6.3936

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g102540.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	33.1	1.4e-10	226	283	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkklege 56 s y+GV++++++gr++A+++d + rk + g ++ +++Aa+a++ a++k++g+ Csa11g102540.1 226 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEDKAARAYDLAALKYWGH 283 57*****************4444.2344336655.7799999***********997 PP
2	AP2	49.1	1.4e-15	354	403	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Csa11g102540.1 354 YRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 403 9*************988532...5**********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.7E-8	226	283	IPR001471	AP2/ERF domain
CDD	cd00018	5.24E-18	226	292	No hit	No description
SuperFamily	SSF54171	3.86E-14	226	291	IPR016177	DNA-binding domain
SMART	SM00380	6.4E-20	227	296	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.5E-11	227	291	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	16.95	227	290	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.6E-5	228	239	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.6E-5	272	292	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.05E-17	352	412	IPR016177	DNA-binding domain
CDD	cd00018	4.88E-11	352	411	No hit	No description
PROSITE profile	PS51032	19.269	353	411	IPR001471	AP2/ERF domain
SMART	SM00380	3.3E-30	353	417	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.1E-18	353	411	IPR001471	AP2/ERF domain
Pfam	PF00847	6.9E-10	354	403	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010492	Biological Process	maintenance of shoot apical meristem identity
GO:0060772	Biological Process	leaf phyllotactic patterning
GO:0060774	Biological Process	auxin mediated signaling pathway involved in phyllotactic patterning
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MAPPPMTNLL TFSLSPMEML KSPDQSHFPP PPSYDASSTP YLIDNFYVFK EEAAASSMAD 60 STTLSTFFDS QILSQTQIPK LEDFLGDSFV RYSDDQTETQ DDSSLIRLYD LRDHTVTGGV 120 TGFFSDHHHH HDFKTVNSSG SQILDDSASD IVATHLSGHA VKSSSTTAEL GFNGGASTGE 180 ALSLAVNNNT SDQPPQSNKK TTASTKKETS DDSKKKVVEP LEQRTSIYRG VTRHRWTGRY 240 EAHLWDNSCR REGQARKGRQ GGYDKEDKAA RAYDLAALKY WGHIATTNFP VASYSKEVEE 300 MNHMTKQEFX IATTNFPVAS YSKELEEMNH MTKQEFIASL RRKSSGFSRG ASMYRGVTRH 360 HQQGRWQARI GRVAGNKDLY LGTFATEEEA AEAYDIAAIK FRGINAVTNF EMNRYDVEAV 420 MKCSFPVGGA AKRHKVAVES PPSSDHSLQQ QDLLPSSSSS DVNPNSIPCG IPFEPSLLYH 480 HQNFFQHYPL VSDSTVQVPM NPAEFFLWPN QSY*

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MAPPPMTNLL TFSLSPMEML KSPDQSHFPP PPSYDASSTP YLIDNFYVFK EEAAASSMAD  60
STTLSTFFDS QILSQTQIPK LEDFLGDSFV RYSDDQTETQ DDSSLIRLYD LRDHTVTGGV  120
TGFFSDHHHH HDFKTVNSSG SQILDDSASD IVATHLSGHA VKSSSTTAEL GFNGGASTGE  180
ALSLAVNNNT SDQPPQSNKK TTASTKKETS DDSKKKVVEP LEQRTSIYRG VTRHRWTGRY  240
EAHLWDNSCR REGQARKGRQ GGYDKEDKAA RAYDLAALKY WGHIATTNFP VASYSKEVEE  300
MNHMTKQEFX IATTNFPVAS YSKELEEMNH MTKQEFIASL RRKSSGFSRG ASMYRGVTRH  360
HQQGRWQARI GRVAGNKDLY LGTFATEEEA AEAYDIAAIK FRGINAVTNF EMNRYDVEAV  420
MKCSFPVGGA AKRHKVAVES PPSSDHSLQQ QDLLPSSSSS DVNPNSIPCG IPFEPSLLYH  480
HQNFFQHYPL VSDSTVQVPM NPAEFFLWPN QSY*

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00589	DAP	Transfer from AT5G65510	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g102540.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY560887	0.0	AY560887.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g65510) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019088688.1	0.0	PREDICTED: AP2-like ethylene-responsive transcription factor AIL7
Swissprot	Q6J9N8	0.0	AIL7_ARATH; AP2-like ethylene-responsive transcription factor AIL7
TrEMBL	R0EWM6	0.0	R0EWM6_9BRAS; Uncharacterized protein
STRING	XP_010444513.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3333	27	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65510.1	0.0	AINTEGUMENTA-like 7

Publications ? help Back to Top
Todd J,Post-Beittenmiller D,Jaworski JG KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana. Plant J., 1999. 17(2): p. 119-30 [PMID:10074711] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Santuari L, et al. The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots. Plant Cell, 2016. 28(12): p. 2937-2951 [PMID:27920338] Du Y,Scheres B PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714 [PMID:29078398]