PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 370aa MW: 41937.5 Da PI: 7.7001

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g102430.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.6	4.1e-11	83	119	3	39
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 ++k +rr+++NReAAr+sR+RKka++++Le+ +L Csa11g102430.1 83 PDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLI 119 6899**************************8655554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.7E-5	81	144	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.772	83	125	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.7E-8	83	114	IPR004827	Basic-leucine zipper domain
CDD	cd14708	1.61E-22	85	136	No hit	No description
SuperFamily	SSF57959	2.63E-7	85	120	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.0E-7	87	113	No hit	No description
PROSITE pattern	PS00036	0	88	103	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.3E-28	171	246	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MNSTSTHFVP PRRVGIYEPV HQFGMWGESF KSNIGNGNMN TPSHIIIPAN NQKLDNNLSE 60 ETSHGTAGTP HMFDQEASTS RNPDKIQRRL AQNREAARKS RLRKKAYVQQ LETSRLKLIQ 120 LEQELDRARQ QGFYVGNGIE TNSLGFSETM NPGIAAFEME YGHWVEEQNR QICELRTVLH 180 GHINDVELCL LVETAMKHYF ELFKMKSTAA KADVFFVMSG MWKTSAERFF LWIGGFRPSD 240 LLKVLLPHFD ILTDQQILDV CNLRQSCQQA EDALSQGMEK LQHTLADCVA GGQLGGGSYI 300 PQVNSAIDRL EALVSFVNQA DHLRHETLQQ MYRILTTRQA ARGLLALGEY FQRLRALSSS 360 WATRHREPT*

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MNSTSTHFVP PRRVGIYEPV HQFGMWGESF KSNIGNGNMN TPSHIIIPAN NQKLDNNLSE  60
ETSHGTAGTP HMFDQEASTS RNPDKIQRRL AQNREAARKS RLRKKAYVQQ LETSRLKLIQ  120
LEQELDRARQ QGFYVGNGIE TNSLGFSETM NPGIAAFEME YGHWVEEQNR QICELRTVLH  180
GHINDVELCL LVETAMKHYF ELFKMKSTAA KADVFFVMSG MWKTSAERFF LWIGGFRPSD  240
LLKVLLPHFD ILTDQQILDV CNLRQSCQQA EDALSQGMEK LQHTLADCVA GGQLGGGSYI  300
PQVNSAIDRL EALVSFVNQA DHLRHETLQQ MYRILTTRQA ARGLLALGEY FQRLRALSSS  360
WATRHREPT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g102430.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK317142	0.0	AK317142.1 Arabidopsis thaliana AT5G65210 mRNA, complete cds, clone: RAFL21-72-M22.
GenBank	AK317488	0.0	AK317488.1 Arabidopsis thaliana AT5G65210 mRNA, complete cds, clone: RAFL23-11-L19.
GenBank	AY087049	0.0	AY087049.1 Arabidopsis thaliana clone 31032 mRNA, complete sequence.
GenBank	AY099593	0.0	AY099593.1 Arabidopsis thaliana DNA binding protein TGA1a-like protein (At5g65210) mRNA, complete cds.
GenBank	AY128838	0.0	AY128838.1 Arabidopsis thaliana DNA binding protein TGA1a-like protein (At5g65210) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010462108.1	0.0	PREDICTED: transcription factor TGA1 isoform X1
Swissprot	Q39237	0.0	TGA1_ARATH; Transcription factor TGA1
TrEMBL	R0EWJ4	0.0	R0EWJ4_9BRAS; Uncharacterized protein
STRING	XP_010462108.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2976	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	0.0	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]