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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Csa11g100860.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family |
NAC |
| Protein Properties |
Length: 277aa MW: 31412.5 Da PI: 7.0185 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa11g100860.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 163.7 | 6.7e-51 | 7 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95
lp+GfrFhPtdeelv++yL+++++++++++ vi+e+d+yk++Pw+Lp+++ +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk++ +
Csa11g100860.1 7 LPAGFRFHPTDEELVKFYLCRRCASEPINV-PVIAEIDLYKFNPWELPEMALYGEKEWYFFSHRDRKYPNGSRPNRAAGTGYWKATGADKPIGK- 99
799***************************.89***************7666789*************************************98. PP
NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
++ g+kk Lvfy g+apkg kt+W+mheyrl
Csa11g100860.1 100 -PKTLGIKKALVFYAGKAPKGIKTNWIMHEYRL 131
.778***************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 277 aa
Download sequence Send
to blast |
MRAELNLPAG FRFHPTDEEL VKFYLCRRCA SEPINVPVIA EIDLYKFNPW ELPEMALYGE 60
KEWYFFSHRD RKYPNGSRPN RAAGTGYWKA TGADKPIGKP KTLGIKKALV FYAGKAPKGI 120
KTNWIMHEYR LANVDRSASS TTNKKNNNLR LDDWVLCRIY NKKGTMEKYL PADEKPTAMM 180
MTTSDSRCSS HVISPDVTCS DHWEVQSEPK WFEFDDAFDD KSMFGGGGGG GSIELLQNDA 240
FVPQFPYSSD FAAPFQDDSP EQKPFLNWMS FAPPQG*
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| Functional Description ? help
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| Source |
Description |
| UniProt | May be involved in regulation of seed germination under flooding. {ECO:0000269|PubMed:19176720}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By low-oxygen stress. {ECO:0000269|PubMed:19176720}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY088431 | 0.0 | AY088431.1 Arabidopsis thaliana clone 6637 mRNA, complete sequence. |
| GenBank | BT000896 | 0.0 | BT000896.1 Arabidopsis thaliana clone C104908 unknown protein (At5g63790) mRNA, complete cds. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Takasaki H, et al.
SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence.
Plant J., 2015. 84(6): p. 1114-23
[PMID:26518251] - Song L, et al.
A transcription factor hierarchy defines an environmental stress response network.
Science, 2017.
[PMID:27811239] - Li B, et al.
Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
Plant Cell, 2018. 30(1): p. 178-195
[PMID:29317470]
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