PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g099120.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 706aa    MW: 76671.4 Da    PI: 5.7277
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g099120.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like71.71.1e-223589156
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56
                    k++lrW +eL ++F+ea+++L G  kA Pkti e+m+vkg+t++h++SHLQkYR +
  Csa11g099120.1 35 KAKLRWKNELQQKFLEAIDHL-GLRKAMPKTIQEFMNVKGVTRTHIASHLQKYRRH 89
                    689******************.9*******************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.6423291IPR017930Myb domain
SuperFamilySSF466898.96E-163392IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-223393IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-223589IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MNGETNSADG SNENEMIAST ISSNGGNSHG RAPKKAKLRW KNELQQKFLE AIDHLGLRKA  60
MPKTIQEFMN VKGVTRTHIA SHLQKYRRHL KKVKLNAKRA EIAKRINREL TSSGSSSILT  120
PQGSYKCTQL SMENLFQSQL GHSVGQSSLI LKKSASRNYM VQQTRSNLLP VGGCRGYSSG  180
VLPLNNEMRS FSATHQVSLV PGLGQYVTPN GSLGMQSNYT GINVDANGNL LGADGAGRVD  240
GNAYGSPGAM NLDVNYNNMS DHGRSTPILP STFGKSLSNG GQTQSNLFAQ MGAWASRSTL  300
GTSQAPRIGQ HGTRNDVYNA GINTNEYIDL TGRGGARFNG TPGEIVGTMN NNMTNQGSST  360
SRLQRISNAQ LDGLIPILES LSVCNNDTGN TVNSQFDQNQ LYQGQVSAGN HELSNTALLQ  420
KFTNWSFNNH QDQVGAGNPE LFNNVLLEGN AINNWSFNNY HQGQVSAGNP NLPNGIALGE  480
NMINNWSYDN HQGQVSAENF GLSNDILLEG NVINNWSFNN YQSQVNVGNY ELANGVFQNA  540
FGNGSFDIHQ GQVNAGYPES ANNVLFERSN WNFGNVNDNP TEKTFNSVDA NSKMHIPNPG  600
MNAITQEEQS RNEQALNYLA VNSEMYLPTP DMNAINQEQG RDEQTLNSIA ASSEMRIPSP  660
TPDMSTLNLE QGVVSAEVPL SPIDQLDSTT EGDCMDFMID IDDLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-163293263ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g099120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019095677.10.0PREDICTED: uncharacterized protein DDB_G0283357-like
TrEMBLR0F0J21e-121R0F0J2_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010477928.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1744179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62110.15e-72G2-like family protein