PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g099070.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MIKC_MADS
Protein Properties Length: 209aa    MW: 24408.1 Da    PI: 9.7595
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g099070.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.93.6e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien + rqvtfskRrng+lKKA+ELSvLCda+v++iifs++g+lyeyss
  Csa11g099070.1  9 KKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQVSLIIFSQRGRLYEYSS 59
                    68***********************************************96 PP
2K-box67.93.3e-2378170597
           K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     ++++ +e   ++l+qe++ +  +i+ L+ ++R+llG+++ s+sl++Lq++ +qL+ksl k+R++K +l++eq+e+l+ kek+l een +L++k
  Csa11g099070.1  78 TSNHDSEIYLQQLKQEASHMITKIDLLEFQKRKLLGQGIASCSLEDLQEIDSQLQKSLGKVRARKAQLFKEQVENLKAKEKQLLEENVKLHQK 170
                     3444677889******************99*************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.31161IPR002100Transcription factor, MADS-box
SMARTSM004328.0E-41160IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.89E-34383IPR002100Transcription factor, MADS-box
CDDcd002656.53E-44378No hitNo description
PRINTSPR004044.0E-31323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-313859IPR002100Transcription factor, MADS-box
PfamPF014867.2E-2387170IPR002487Transcription factor, K-box
PROSITE profilePS5129713.27487185IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MVRGKIEMKK IENATSRQVT FSKRRNGLLK KAYELSVLCD AQVSLIIFSQ RGRLYEYSSS  60
DMKKTIERYR KYTKDHETSN HDSEIYLQQL KQEASHMITK IDLLEFQKRK LLGQGIASCS  120
LEDLQEIDSQ LQKSLGKVRA RKAQLFKEQV ENLKAKEKQL LEENVKLHQK NVIDTWRGLN  180
EQQEKYRVID LNLDVQTDLF IGLPDRNC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-22182183Myocyte-specific enhancer factor 2B
1tqe_Q2e-22182183Myocyte-specific enhancer factor 2B
1tqe_R2e-22182183Myocyte-specific enhancer factor 2B
1tqe_S2e-22182183Myocyte-specific enhancer factor 2B
5f28_A2e-22182183MEF2C
5f28_B2e-22182183MEF2C
5f28_C2e-22182183MEF2C
5f28_D2e-22182183MEF2C
6c9l_A2e-22182183Myocyte-specific enhancer factor 2B
6c9l_B2e-22182183Myocyte-specific enhancer factor 2B
6c9l_C2e-22182183Myocyte-specific enhancer factor 2B
6c9l_D2e-22182183Myocyte-specific enhancer factor 2B
6c9l_E2e-22182183Myocyte-specific enhancer factor 2B
6c9l_F2e-22182183Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g099070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0542200.0AY054220.1 Arabidopsis thaliana At2g45660/F17K2.19 mRNA, complete cds.
GenBankAY0652060.0AY065206.1 Arabidopsis thaliana unknown protein (At5g62165) mRNA, complete cds.
GenBankAY0660350.0AY066035.1 Arabidopsis thaliana At2g45660/F17K2.19 mRNA, complete cds.
GenBankAY0965090.0AY096509.1 Arabidopsis thaliana unknown protein (At5g62165) mRNA, complete cds.
GenBankAY1412130.0AY141213.1 Arabidopsis thaliana MADS-box protein AGL42 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010444066.11e-151PREDICTED: MADS-box protein AGL42-like isoform X1
SwissprotQ9FIS11e-136AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A1J3H2031e-132A0A1J3H203_NOCCA; MADS-box protein SOC1
STRINGXP_010444066.11e-150(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.31e-138AGAMOUS-like 42