PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

ERF

Protein Properties

Length: 249aa MW: 27752.8 Da PI: 5.8833

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g098720.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.8	7.4e-20	86	135	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f tae Aa a+++a++k++g Csa11g098720.1 86 HYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFETAESAALAYDEAALKFKG 135 7******.******93....36**********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	2.9E-33	85	144	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.38E-22	86	144	IPR016177	DNA-binding domain
SMART	SM00380	1.4E-37	86	149	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.803	86	143	IPR001471	AP2/ERF domain
CDD	cd00018	6.28E-33	86	144	No hit	No description
Pfam	PF00847	4.3E-14	86	135	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-11	87	98	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-11	109	125	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0050832	Biological Process	defense response to fungus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MYGNWPSNES EEKEEDENLF PAFSSRSQHD MRVMVSALTQ VIGNQQSNPH DNMSSIDNHP 60 SVYNPQDPNQ QVAPTHQDEG NLRRRHYRGV RQRPWGKWAA EIRDPQKAAR VWLGTFETAE 120 SAALAYDEAA LKFKGSKAKL NFPERVQLGS NSTYYSSNQV PQIQPQNNIP YNQYYQDGSS 180 NDMLSFNLGG GYGSTSGNGY SMSYDHSTTT AATTTSSSSG GSSRQQEEQD YARFWHFGDS 240 SSSSRSGF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	4e-27	85	146	1	63	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269\|PubMed:23616605}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g098720.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269\|PubMed:23616605}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY560862	0.0	AY560862.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g61890) mRNA, complete cds.
GenBank	BT031357	0.0	BT031357.1 Arabidopsis thaliana unknown protein (At5g61890) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010444024.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF114-like
Swissprot	Q9FH54	1e-122	EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBL	R0EUW4	1e-139	R0EUW4_9BRAS; Uncharacterized protein
STRING	XP_010444024.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5292	18	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61890.1	2e-94	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kong X, et al. PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis. Cell Rep, 2018. 22(5): p. 1350-1363 [PMID:29386120]