PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g094020.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 565aa    MW: 61258.6 Da    PI: 7.3336
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g094020.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.99.1e-17158207155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Csa11g094020.1 158 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVKFRG 207
                     78*******************......55***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.54E-11158214No hitNo description
PfamPF008471.5E-8158207IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-15158216IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-16159215IPR001471AP2/ERF domain
PROSITE profilePS5103217.332159215IPR001471AP2/ERF domain
SMARTSM003801.1E-30159221IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MLDLNLGFDS DTVKGVSLNN QMDESVTSNS SVVNAEASSS CIDGEDELCS TRTVKFQFEI  60
LKGGGGEEED DGDDDDERSA VMMTKEFFPV PKDGISFMDS SAQSSRNTVD ISFQRGNQGG  120
DFIGSGSGGG GGGDAVRVMQ PPSQPVKKSR RGPRSKSSQY RGVTFYRRTG RWESHIWDCG  180
KQVYLGGFDT AHAAARAYDR AAVKFRGLEA DINFVISDYE EDLKQMANLS KEEVVQVLRR  240
QSSGFSRNNS RYQGVALQKI GGWGGAQMEQ FHGNMGCDKA AMQWNGRQAG SLIEPHASRM  300
IPEAANVKLD LNLGISLSLG DSPKQKDRAQ RLHHVPNSIV CGRNTKMENH MATASCDTPF  360
NFLKRGSDHL SNRHSLPSAF FSTMERTPEK GPMLRSHQSF PARTWQGHDQ SSGGTAVAAT  420
APPLFSNAAS SGFSLSDTRP PSSPATPHPS QPFFNLNQPG LYERTPEKGP MLRSHQSFPA  480
RTWQGHDQSS GGTAVAATAP PLFSNAASSG FSLSDTRPPS SPATPHPSQP FFNLNQPGLY  540
VVHPSDYTSQ NHHHNLMNRS QPPP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g094020.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0019160.0BT001916.1 Arabidopsis thaliana clone C105157 putative APETALA2 protein (At5g60120) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010443800.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE2 isoform X1
RefseqXP_010443802.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE2 isoform X3
SwissprotQ9LVG20.0TOE2_ARATH; AP2-like ethylene-responsive transcription factor TOE2
TrEMBLD7MT670.0D7MT67_ARALL; Uncharacterized protein
STRINGXP_010443802.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128361730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60120.10.0target of early activation tagged (EAT) 2