PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g093290.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 617aa    MW: 69936.6 Da    PI: 6.0274
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g093290.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS400.41.8e-1222306041374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfs 94 
                     l++lL++cA+av+s d+++a + L++++ ++s++gd +qRla+yf+ AL+ar+++   + ++  +p+s+ts   +++ l+a+klf++++Pi+   
  Csa11g093290.1 230 LRSLLTQCAQAVASFDQRRAAEKLKEIRSHSSSSGDGTQRLAFYFADALEARITGnIAPPVSTPFPSSTTS---MVDILKAYKLFVHTCPIYVTD 321
                     6899***************************************************6777777777777777...********************* PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                     +++aN+ I+e + +++++Hi+Df++ +G+QWp+Ll aL++Rp+gpp+lR+Tg++ p+sg   ++++eetg+rL++f+++++vpfefn+ +ak++e
  Csa11g093290.1 322 YFAANKSIYELALKATTLHIVDFGVLYGFQWPCLLLALSKRPGGPPKLRVTGIELPQSGfrPSDRVEETGRRLKRFCDKFNVPFEFNF-IAKKWE 415
                     **********************************************************9*****************************.7***** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres..e 280
                     +++l+e+ ++pgE+++Vn++++l++++de+vsl+s+rd+vLkl+++++P+++v++e +  +ns+ F++rf eal ++s+lfd++++++ +e+  +
  Csa11g093290.1 416 SISLDEIVINPGETTVVNCIHRLQYTPDETVSLDSPRDTVLKLFRDINPDLFVFAEINGMYNSPFFMTRFREALFHFSSLFDMFDTTIQAEDeyK 510
                     ***************************************************************************************99998899 PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +r+ +E+ell r++++v++cegaer++r et+++Wr r+ +aGFkp+++s++++k+ak ++rk + + + ++++++++++gWk+r ++++S+W+
  Csa11g093290.1 511 NRALLEKELLVRDAMSVISCEGAERFARPETYKQWRVRILRAGFKPATISKQIMKEAKEIVRKRYHRDFVIDSDNNWMLQGWKGRVIYAFSCWK 604
                     *****************************************************************999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.378204584IPR005202Transcription factor GRAS
PfamPF035146.2E-120230604IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MDALLQVSVD GFRFENGSGS CCKPRNNNLE SGTNLFPSFH EPQTQSSSPN DSPPSVCLDN  60
SPVLKYINDM LMDEEDFVGE SRDNLALQAA ERSFYEILQQ QSPESDHTTS SSSDQNSGDD  120
PFFTSISTTT TSADSAALVS NGESQRKYRH RDDEEDDLET NRRNKQPAIF VSEMEELAVK  180
FEHVLLVCKA NQEEDESSIT KQQSQQPNRA GRAKGSSNRS KTQKPNSVDL RSLLTQCAQA  240
VASFDQRRAA EKLKEIRSHS SSSGDGTQRL AFYFADALEA RITGNIAPPV STPFPSSTTS  300
MVDILKAYKL FVHTCPIYVT DYFAANKSIY ELALKATTLH IVDFGVLYGF QWPCLLLALS  360
KRPGGPPKLR VTGIELPQSG FRPSDRVEET GRRLKRFCDK FNVPFEFNFI AKKWESISLD  420
EIVINPGETT VVNCIHRLQY TPDETVSLDS PRDTVLKLFR DINPDLFVFA EINGMYNSPF  480
FMTRFREALF HFSSLFDMFD TTIQAEDEYK NRALLEKELL VRDAMSVISC EGAERFARPE  540
TYKQWRVRIL RAGFKPATIS KQIMKEAKEI VRKRYHRDFV IDSDNNWMLQ GWKGRVIYAF  600
SCWKPAEKLT YNHVSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-4523660525380Protein SCARECROW
5b3h_A4e-4523660524379Protein SCARECROW
5b3h_D4e-4523660524379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g093290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256040.0AB025604.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F2O15.
GenBankAY0350010.0AY035001.1 Arabidopsis thaliana putative scarecrow 11 protein (At5g59450) mRNA, complete cds.
GenBankAY0629420.0AY062942.1 Arabidopsis thaliana putative scarecrow 11 protein (At5g59450) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010443702.10.0PREDICTED: scarecrow-like protein 11
SwissprotQ9LTI50.0SCL11_ARATH; Scarecrow-like protein 11
TrEMBLA0A178UGG60.0A0A178UGG6_ARATH; Uncharacterized protein
STRINGXP_010443702.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59450.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]