PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g092570.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 469aa    MW: 52989.1 Da    PI: 9.3923
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g092570.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-17146192148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT++Ed +l+++v+q+G + W+ I++++  gR +kqc++rw+++l
   Csa11g092570.1 146 KGQWTPDEDRKLIRLVRQHGERKWAMISEKLE-GRAGKQCRERWHNHL 192
                      799*****************************.*************97 PP
2Myb_DNA-binding46.87e-15199240245
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + W++eE+  lvd + + G++ W+ Ia+ ++ gRt++++k++w+
   Csa11g092570.1 199 DGWSEEEERVLVDSHMRIGNK-WAEIAKLIP-GRTENSIKNHWN 240
                      56*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.034141196IPR017930Myb domain
SuperFamilySSF466899.73E-29143239IPR009057Homeodomain-like
SMARTSM007176.1E-16145194IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-26147199IPR009057Homeodomain-like
PfamPF139212.1E-18149207No hitNo description
CDDcd001675.00E-15149192No hitNo description
PROSITE profilePS5129415.843197247IPR017930Myb domain
SMARTSM007172.8E-13197245IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-19200245IPR009057Homeodomain-like
CDDcd001673.74E-10201243No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MEDRRLVHGA APPLTAVDRF LYGQKNDALF SKKQECSRDQ AIVKTKMSMI ETRSNNRKNT  60
TFGPTREKHL VLTGGNRSPI GEVVTIKRAA RYSQNSTKKR SYMNLIKGQW TADEDRSPIG  120
EVVTMKRAGR YSQNSTKKQP YTNLIKGQWT PDEDRKLIRL VRQHGERKWA MISEKLEGRA  180
GKQCRERWHN HLRPDIKKDG WSEEEERVLV DSHMRIGNKW AEIAKLIPGR TENSIKNHWN  240
ATKRRQNSKR KHKRESKADN NDSDGSPSAK RPCILQDYIK SIDNNGIYKN NNETTISVIS  300
TLNLDRQTYS DGDSASSIPG DPYDDELVYL QNIFANHPIS LENIGMSQTS DEVTQSSSSG  360
IMIKSPNLNL YNNIGTDHQE ATIAAPASTS HLASDMYLSY LLNGMTSSYL DTHFPSCSSS  420
TSSTTVEHGD HNGFHEPQAN SSSERREMDL IEMLSGYIQG SNICFPLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-431442462104C-Myb DNA-Binding Domain
1msf_C2e-431442462104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242253KRRQNSKRKHKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for female gametophyte fertility. Acts redundantly with MYB64 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5. {ECO:0000269|PubMed:24068955}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g092570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3719780.0AF371978.1 Arabidopsis thaliana putative transcription factor MYB119 (MYB119) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010443635.10.0PREDICTED: transcription factor MYB51
SwissprotQ9FIM40.0MY119_ARATH; Transcription factor MYB119
TrEMBLR0GRY00.0R0GRY0_9BRAS; Uncharacterized protein
STRINGXP_010443635.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42652656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.10.0myb domain protein 119
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]