PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g092360.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 505aa    MW: 54896.5 Da    PI: 5.5051
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g092360.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.41.2e-08146166526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++ G C++Gd+C +aHg
  Csa11g092360.1 146 PCPEFRK-GSCSRGDTCEYAHG 166
                     8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127961.2E-953123IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.66E-1356133IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00445787IPR002110Ankyrin repeat
PROSITE profilePS5029713.46957127IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.1E-1358132IPR020683Ankyrin repeat-containing domain
CDDcd002041.80E-1359132No hitNo description
SMARTSM002480.006392124IPR002110Ankyrin repeat
PROSITE profilePS500889.37792127IPR002110Ankyrin repeat
SMARTSM003564.9E-5141167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4145168IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-6146166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.263146168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-4174204IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.221176200IPR000571Zinc finger, CCCH-type
SMARTSM0035620176199IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MGDDELSHLK FSLLLESSAC NDLSGFKSLV EEEGLENIDR SGLWYGRRLG SKKMGFEERT  60
PLMIAALFGS KDIVDYIIST GLVDVNRSCG SDGATALHCA ISGLSANSLE VVTLLLKGSA  120
DPDSCDAYGE NARRRDPRKY HYSCVPCPEF RKGSCSRGDT CEYAHGIFEC WLHPAQYRTR  180
LCKDETNCSR RVCFFAHKPE ELRPLYPSTG SGVPSPRSSF SSCNSSSAYD MAPISPLPLG  240
ASATPPLSPN GVSSPMGGGK TWMNWPTITP PALQLPGSRL KSALNAREID FSEEIQSLSS  300
PNRWNNNTPM SVASSPFSGK GMNMLAGGAM SPVNSLTDMF GTEDNNTSGL QIRRSIINPQ  360
LHPNSLSSSP VGANSLFSMD SSTVMASRAA EFAKQRSQSF TERNNGLNHH PAISSMTSTC  420
LNDWASLDGK LDWSVQGDEL QKLRNSTSFR LRAGGMEPRL PNEGTGLEEP DVSWVEPLVK  480
EPQETRLAPV WMEQSYMETE QTVA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g092360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0207550.0AB020755.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MZN1.
GenBankAY0541760.0AY054176.1 Arabidopsis thaliana AT5g58620/mzn1_70 mRNA, complete cds.
GenBankAY1033140.0AY103314.1 Arabidopsis thaliana AT5g58620/mzn1_70 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010443605.10.0PREDICTED: zinc finger CCCH domain-containing protein 66-like
RefseqXP_019088406.10.0PREDICTED: zinc finger CCCH domain-containing protein 66-like
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLR0GPL20.0R0GPL2_9BRAS; Uncharacterized protein
STRINGXP_010443605.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein