PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g092000.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 445aa    MW: 50246.4 Da    PI: 5.7733
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g092000.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.78.4e-11394441247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      + WT eE e l ++vk++G+  Wk I +  +     Rt+ ++k++w+++
   Csa11g092000.1 394 KFWTHEEVEALREGVKEYGKS-WKDIKNGNPavfAERTEVDLKDKWRNL 441
                      67*****************88.************99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.357388444IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-12390441IPR009057Homeodomain-like
SuperFamilySSF466891.5E-12390441IPR009057Homeodomain-like
SMARTSM007172.3E-7392444IPR001005SANT/Myb domain
CDDcd116601.58E-15394442No hitNo description
PfamPF002493.9E-8396441IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MEVFDNWVAE FFIRRQHNPR VLPTKLISAL QLGDSSDCLK LKISSVLRDI SNSLIRGAID  60
EGTLDLLEVL EKLLLQQHSL LMESHKSAYC WTAAECTLRF MWPLIASDGF FTEALERIWT  120
KRIGVLKERG SDLVSRDLLK WETDLKKALE DPELYQRIRE TNIRYTAITF LTQLLKEQWA  180
LLGISSLESV VQRRFLKRKA DNVEDDIVDK RGNTNAAAEC TRRLESDTID NANEPRGESG  240
DGNGNNREND NDVEGVGCLV NEKHASEEEQ TVGAQEQFYE PSLDKGDKTV ARELKDYLLE  300
IQGQIDPSTR QREEPNNAID HSVNVTPPPT RLNRTGTGGQ DHNEAPDNVN EKGSGSQGTW  360
SGRVRPRLPT PVPLNVSPLK KGGLAKSHVR RPKKFWTHEE VEALREGVKE YGKSWKDIKN  420
GNPAVFAERT EVDLKDKWRN LVGG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192198RRFLKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g092000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010443558.10.0PREDICTED: uncharacterized protein LOC104726402 isoform X2
TrEMBLA0A178UH590.0A0A178UH59_ARATH; Uncharacterized protein
STRINGXP_010443555.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77201731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.20.0MYB_related family protein