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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g090950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | AP2 | ||||||||
Protein Properties | Length: 558aa MW: 60703.7 Da PI: 7.6211 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.9 | 3.3e-15 | 202 | 261 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g Csa11g090950.1 202 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 261 57*******************666664477446*************************98 PP | |||||||
2 | AP2 | 46.3 | 1.1e-14 | 306 | 355 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Csa11g090950.1 306 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 355 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.3E-12 | 202 | 261 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.15E-22 | 202 | 271 | No hit | No description |
SuperFamily | SSF54171 | 1.57E-17 | 202 | 271 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.1E-30 | 203 | 275 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.9E-16 | 203 | 270 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.23 | 203 | 269 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-6 | 204 | 215 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.38E-25 | 304 | 365 | No hit | No description |
SuperFamily | SSF54171 | 9.81E-18 | 304 | 365 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.7E-33 | 305 | 369 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.203 | 305 | 363 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.0E-18 | 305 | 363 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-9 | 306 | 355 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-6 | 345 | 365 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 558 aa Download sequence Send to blast |
MKNNNNKSSS SSYDSSLSPS SSSSSHQNWL SFSLSNNNNN NFNSSSNPNL TSSTSDHQHP 60 HPSHLSLFQA FSTSPAERQD DSPRVSTGDA TAVLSIYPGG PKLENFLGGG ATTTTTRPMQ 120 QMQSLGGVVF SSDLQPPLHP PSAAEIYDSE LKSIAASFLG NYSGGHSSEV SSVHKQQQNP 180 LVVPETSPTP KKSVESFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ SRKGRQVYLG 240 GYDKEEKAAR AYDLAALKYW GPTTTTNFPI SNYESELEEM KHMTRQEFVA SLRRKSSGFS 300 RGASMYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT 360 NFDISRYDVK SIASCNLPVG GLMPKPSQAT ATTTAEKTVD LTPPEPPSLT TPSLTFDVAT 420 PVHDHGGTFY HTGIPIKPDP ADHYWSNVFG FQANTKAEMR PLGTFVSDLH NPSPGYAIMP 480 LLQEGENNFG GAYVGAEGYY NNHSSASSTV SAIPLSSTTA IGNANEGYWI NNNNISNSYQ 540 NAKSNLSVLQ TPVFGLE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g090950.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY585685 | 0.0 | AY585685.1 Arabidopsis thaliana clone at5g57390 AP2/EREBP transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010443425.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL5 isoform X1 | ||||
Swissprot | Q6PQQ3 | 0.0 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | R0EWC3 | 0.0 | R0EWC3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010443425.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11583 | 28 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 0.0 | AINTEGUMENTA-like 5 |
Publications ? help Back to Top | |||
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