PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Function |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Csa11g090220.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HRT-like

Protein Properties

Length: 506aa MW: 56938.5 Da PI: 9.2825

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g090220.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	52.6	7.8e-17	302	332	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +C v le+Gs+C+r+PvkgRKRC eHKG+R+ Csa11g090220.1 302 VCRVVLENGSFCSRSPVKGRKRCVEHKGQRV 332 699***************************7 PP
2	HRT-like	52	1.2e-16	363	393	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGvil d +C++ Pv+gRKRCe HKGmRi Csa11g090220.1 363 TCGVILPDMEPCNKRPVPGRKRCEDHKGMRI 393 7*****************************7 PP
3	HRT-like	30.2	7.5e-10	432	458	2	28
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKG 28 C +++++G +C+r+ kg KRC++HK Csa11g090220.1 432 CEATTKNGLPCTRSSSKGSKRCWQHKE 458 99************************7 PP
4	HRT-like	51.4	1.8e-16	475	504	2	31
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGv+ +G +C+r+PvkgRKRCeeHKGmRi Csa11g090220.1 475 CGVKQCNGLICERSPVKGRKRCEEHKGMRI 504 *****************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence Send to blast
MEVLIGSNDW EDFNNGKDGV GRYRVQNLPR KSFPGLYEIG VAVISQDQGR KLEPDDVLIG 60 SNDWEDFNNG KDGVGRYRVQ NLPRKSFPGL YELGVAVISQ DQGRKLEPDD VLAAYLGQAE 120 SVRTRLQRYG RSGAHLRNVY NLVDCETVES SPVKKAVTGG LFEDIFSKGG SILYRWAPMG 180 SKRVAEATEG MLLSTFDYAW NKGSNGERRQ LDLLKKLGDR EFMSKRKSGI SRVFFPFLRN 240 QVGIRIKGEK HVLKEERKLS SDVDEEEKSS NFLTSLLKLT RSRPQPVSDR FDEVDGSSTD 300 PVCRVVLENG SFCSRSPVKG RKRCVEHKGQ RVCRVSPVKQ SPPPNPEMFT RQDHHNHNDS 360 DVTCGVILPD MEPCNKRPVP GRKRCEDHKG MRINAFLFLL NQTDREKTVK DERSDPESHK 420 ELSDEEGSPS FCEATTKNGL PCTRSSSKGS KRCWQHKEKI SPVCFQPKAA KIVACGVKQC 480 NGLICERSPV KGRKRCEEHK GMRIT*

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence Send to blast

MEVLIGSNDW EDFNNGKDGV GRYRVQNLPR KSFPGLYEIG VAVISQDQGR KLEPDDVLIG  60
SNDWEDFNNG KDGVGRYRVQ NLPRKSFPGL YELGVAVISQ DQGRKLEPDD VLAAYLGQAE  120
SVRTRLQRYG RSGAHLRNVY NLVDCETVES SPVKKAVTGG LFEDIFSKGG SILYRWAPMG  180
SKRVAEATEG MLLSTFDYAW NKGSNGERRQ LDLLKKLGDR EFMSKRKSGI SRVFFPFLRN  240
QVGIRIKGEK HVLKEERKLS SDVDEEEKSS NFLTSLLKLT RSRPQPVSDR FDEVDGSSTD  300
PVCRVVLENG SFCSRSPVKG RKRCVEHKGQ RVCRVSPVKQ SPPPNPEMFT RQDHHNHNDS  360
DVTCGVILPD MEPCNKRPVP GRKRCEDHKG MRINAFLFLL NQTDREKTVK DERSDPESHK  420
ELSDEEGSPS FCEATTKNGL PCTRSSSKGS KRCWQHKEKI SPVCFQPKAA KIVACGVKQC  480
NGLICERSPV KGRKRCEEHK GMRIT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in the regulation of cell differentiation in meristems. Probably regulates the expression of various KNAT genes involved in the maintenance of the cells in an undifferentiated, merismastic state. Plays a role in the regulation of gibberellin 20 oxidase and the gibberellin-regulated protein GASA4. Localizes in the nucleus during the cellular differentiation state and may act via a single strand cutting domain (PubMed:17991462). Transcriptional regulator required for the induction of dormancy during late seed development. Interacts genetically with FUS3 and may be component of the same regulatory pathway during embryogenesis. Binds both linear and supercoiled DNA without sequence preference (PubMed:22226340). {ECO:0000269\|PubMed:17991462, ECO:0000269\|PubMed:22226340}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g090220.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB013392	0.0	AB013392.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK19.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010443331.1	0.0	PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2-like
Swissprot	F4K933	0.0	ET2_ARATH; Protein EFFECTOR OF TRANSCRIPTION 2
TrEMBL	A0A178UQQ2	0.0	A0A178UQQ2_ARATH; ET2
STRING	XP_010443331.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2954	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	0.0	effector of transcription2