PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g089420.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family FAR1
Protein Properties Length: 632aa    MW: 71774.1 Da    PI: 7.2347
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g089420.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.82.1e-19107189390
            FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     Y++Y+ + GF+vrk++ +k+  ++++++  +vCsk+g+r+e + +   ++ ++++tr+gC+a++   +++++k+++ ++e +HnH+l+
  Csa11g089420.1 107 YKNYGGNHGFDVRKQRREKK--KDKVVRLVYVCSKQGYRKELEVE---KSYSHPVTRCGCNAHMACYLQENEKYKIVSFEPNHNHNLV 189
                     9*************987776..6679**************98766...999***********************************97 PP
2FAR161.82.1e-19372454390
            FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     Y++Y+ + GF+vrk++ +k+  ++++++  +vCsk+g+r+e + +   ++ ++++tr+gC+a++   +++++k+++ ++e +HnH+l+
  Csa11g089420.1 372 YKNYGGNHGFDVRKQRREKK--KDKVVRLVYVCSKQGYRKELEVE---KSYSHPVTRCGCNAHMACYLQENEKYKIVSFEPNHNHNLV 454
                     9*************987776..6679**************98766...999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.0E-16107189IPR004330FAR1 DNA binding domain
PfamPF031015.0E-16372454IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MGDKDNEEVL ASREIAMESQ LSGHEIVLDG RESSLQVSGD FGLLSQNSID FLATNDEFEE  60
ECDIANKEDY VQTEEVATLE AKEKNEKKDE ICIGMEFSSD EAAYIAYKNY GGNHGFDVRK  120
QRREKKKDKV VRLVYVCSKQ GYRKELEVEK SYSHPVTRCG CNAHMACYLQ ENEKYKIVSF  180
EPNHNHNLVR TPMKHLLKKQ YIVIGDYVAK KVKAPSGTIT QSIGKRYSHL CRNFREIASA  240
AAEHVELTMC ANEAACQLLK KLEEKKKELV KTNEWMLPTS NVEPVKGEEE DVEVSNARGI  300
KRKATVGRPK NKTVGPHATN DEFEEECDIA NKEDYVQTEE VATLEAKEKN EKKDEICIGM  360
EFSSDEAAYI AYKNYGGNHG FDVRKQRREK KKDKVVRLVY VCSKQGYRKE LEVEKSYSHP  420
VTRCGCNAHM ACYLQENEKY KIVSFEPNHN HNLVRTPMKH LLKKQYIVIG DYVAKKVKAP  480
SGTITQSIGK RYSHLCRNFR EIASAAAEHV ELTMCANEAA CQLLKKLEEK KKELVKTNEW  540
MLPTSNVEPV KGEEEDVEVS NARGIKRKAT VGRPKNKTVG PHGRYLNDSS LTLDTQLSVA  600
TTSPTLYNTS FASQVLQDKQ EDRNTDEENK V*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g089420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010418903.11e-125PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLR0EZH38e-77R0EZH3_9BRAS; Uncharacterized protein
STRINGXP_010418903.11e-124(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM6200613
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.14e-11FAR1 family protein