PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g089420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | FAR1 | ||||||||
Protein Properties | Length: 632aa MW: 71774.1 Da PI: 7.2347 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 61.8 | 2.1e-19 | 107 | 189 | 3 | 90 |
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++Y+ + GF+vrk++ +k+ ++++++ +vCsk+g+r+e + + ++ ++++tr+gC+a++ +++++k+++ ++e +HnH+l+ Csa11g089420.1 107 YKNYGGNHGFDVRKQRREKK--KDKVVRLVYVCSKQGYRKELEVE---KSYSHPVTRCGCNAHMACYLQENEKYKIVSFEPNHNHNLV 189 9*************987776..6679**************98766...999***********************************97 PP | |||||||
2 | FAR1 | 61.8 | 2.1e-19 | 372 | 454 | 3 | 90 |
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++Y+ + GF+vrk++ +k+ ++++++ +vCsk+g+r+e + + ++ ++++tr+gC+a++ +++++k+++ ++e +HnH+l+ Csa11g089420.1 372 YKNYGGNHGFDVRKQRREKK--KDKVVRLVYVCSKQGYRKELEVE---KSYSHPVTRCGCNAHMACYLQENEKYKIVSFEPNHNHNLV 454 9*************987776..6679**************98766...999***********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.0E-16 | 107 | 189 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 5.0E-16 | 372 | 454 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 632 aa Download sequence Send to blast |
MGDKDNEEVL ASREIAMESQ LSGHEIVLDG RESSLQVSGD FGLLSQNSID FLATNDEFEE 60 ECDIANKEDY VQTEEVATLE AKEKNEKKDE ICIGMEFSSD EAAYIAYKNY GGNHGFDVRK 120 QRREKKKDKV VRLVYVCSKQ GYRKELEVEK SYSHPVTRCG CNAHMACYLQ ENEKYKIVSF 180 EPNHNHNLVR TPMKHLLKKQ YIVIGDYVAK KVKAPSGTIT QSIGKRYSHL CRNFREIASA 240 AAEHVELTMC ANEAACQLLK KLEEKKKELV KTNEWMLPTS NVEPVKGEEE DVEVSNARGI 300 KRKATVGRPK NKTVGPHATN DEFEEECDIA NKEDYVQTEE VATLEAKEKN EKKDEICIGM 360 EFSSDEAAYI AYKNYGGNHG FDVRKQRREK KKDKVVRLVY VCSKQGYRKE LEVEKSYSHP 420 VTRCGCNAHM ACYLQENEKY KIVSFEPNHN HNLVRTPMKH LLKKQYIVIG DYVAKKVKAP 480 SGTITQSIGK RYSHLCRNFR EIASAAAEHV ELTMCANEAA CQLLKKLEEK KKELVKTNEW 540 MLPTSNVEPV KGEEEDVEVS NARGIKRKAT VGRPKNKTVG PHGRYLNDSS LTLDTQLSVA 600 TTSPTLYNTS FASQVLQDKQ EDRNTDEENK V* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g089420.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010418903.1 | 1e-125 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | R0EZH3 | 8e-77 | R0EZH3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010418903.1 | 1e-124 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6200 | 6 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 4e-11 | FAR1 family protein |