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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g088150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB | ||||||||
Protein Properties | Length: 599aa MW: 66424.4 Da PI: 7.0531 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.9 | 1.5e-15 | 30 | 77 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ede+l+ +v++ G g+W+++ + g+ R++k+c++rw ++l Csa11g088150.1 30 KGPWTAAEDEILAAYVRENGEGNWNAVQKNTGLARCGKSCRLRWANHL 77 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 46.2 | 1e-14 | 83 | 126 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T +E+ l++++++qlG++ W++ a+ ++ gRt++++k++w++ Csa11g088150.1 83 KGSFTGDEERLIIQLHAQLGNK-WARMAAQLP-GRTDNEIKNYWNT 126 789*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.98 | 25 | 77 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.12E-28 | 29 | 124 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-12 | 29 | 79 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-14 | 30 | 77 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-21 | 31 | 84 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.97E-10 | 32 | 77 | No hit | No description |
PROSITE profile | PS51294 | 24.132 | 78 | 132 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-15 | 82 | 130 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-13 | 83 | 126 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-24 | 85 | 130 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.01E-10 | 85 | 128 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 599 aa Download sequence Send to blast |
MIMYGGGGGA AGKDGGSTNH ISDGGVVLKK GPWTAAEDEI LAAYVRENGE GNWNAVQKNT 60 GLARCGKSCR LRWANHLRPN LKKGSFTGDE ERLIIQLHAQ LGNKWARMAA QLPGRTDNEI 120 KNYWNTRLKR LHRQGLPLYP PDIIPNHQLH PHPHPHPHHQ QQQHQQQQQQ HNHHHHYQQM 180 YFQPQSSQPN TPSSSPLPSP TPLNANANSS SSFTFHTPTA NLLHPLSPHT PNTPQTPSQL 240 CSTPPPPPLS SPFSSPRNNQ YPTLPLFALQ HSQTNNNDAN FTFPRPPPLL QPPSSLLAKR 300 YNNANIPLNC INRVSTAPFS PVSRESYTSF LTLPYPSPTS QTATYHNTNN NYSSSPSFSL 360 NHSSSYPTTT SSPSYLHSHY TPSSTSFHNS PVYSMKQEQL PSNQIPQIDA YNNINNFTDN 420 ERQNHNLNSS GVHRRSSSYS LLEDVLEEAE VLAAEGRGRP SKRRQLTASP PNHNSDNNNN 480 NNNNNNDNND NFFSVSFGHY DSSDNLCSLQ DLKPQEDESL QMNTMQEDIA KLLDWGSDSG 540 EISNGQSSVV TDENLVLDVH QFASLFPADS TAVVTATNDH HNNNNNNNCS WGDMQGLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 1e-28 | 27 | 130 | 1 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 1e-28 | 27 | 130 | 1 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:24278028). Binds to 5'-CAACTGTC-3' and/or 5'-TAACAAA-3' motif in target gene promoter to promote their expression (By similarity). Together with MYB97 and MYB101, functions as a male factor that controls pollen tube-synergid interaction in fertilization. Required for pollen tube growth arrest and sperm cell release in the female gametophyte, probably via the regulation of pollen tube-specific gene expression (PubMed:24278028, PubMed:23791732). {ECO:0000250|UniProtKB:O80883, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g088150.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates in pollen tube 4 hours after pollen germination. {ECO:0000269|PubMed:19714218}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF371979 | 0.0 | AF371979.1 Arabidopsis thaliana putative transcription factor MYB120 (MYB120) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019088568.1 | 0.0 | PREDICTED: myb-like protein A isoform X1 | ||||
Swissprot | Q94FL7 | 0.0 | MY120_ARATH; Transcription factor MYB120 | ||||
TrEMBL | R0GJN2 | 0.0 | R0GJN2_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | Bostr.26833s0761.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9939 | 19 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55020.1 | 1e-174 | myb domain protein 120 |
Publications ? help Back to Top | |||
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