PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

ERF

Protein Properties

Length: 368aa MW: 40770 Da PI: 4.5166

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g085120.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.6	8.7e-20	132	182	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIrdp + r+r++lg+f taeeAa +++a+ +l+g Csa11g085120.1 132 KKFRGVRQRP-WGKWAAEIRDPEQ---RRRIWLGTFETAEEAAVVYDNAAIRLRG 182 59******.******743...5***********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	5.60E-34	132	189	No hit	No description
SMART	SM00380	1.7E-39	133	196	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.4E-30	133	190	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.775	133	190	IPR001471	AP2/ERF domain
Pfam	PF00847	4.6E-12	133	182	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.24E-21	133	191	IPR016177	DNA-binding domain
PRINTS	PR00367	2.8E-10	134	145	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.8E-10	156	172	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042991	Biological Process	transcription factor import into nucleus
GO:0048825	Biological Process	cotyledon development
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MEEFIDFRPL KYTEHKTSVT KYTKKSPPAK LSSSAVDHHH HHHQSLRKVS ICFTDPDATD 60 SSSDEDEQDF LFPRRRVKRF VNEITVEPAC NNTTTGGVSL KDKKRLSSSS ADESQSPAKR 120 PLKASVVAGQ TKKFRGVRQR PWGKWAAEIR DPEQRRRIWL GTFETAEEAA VVYDNAAIRL 180 RGPDALTNFS IPPQEEEEEP EPVLDTKPEI NITTTTTTTT TSCSESTEDF QHLSSPTSVL 240 NLGSEEIQQV QQPFKSAKPE PGISDAPWWH TGFGAGSGET DDSFPLDTPF LDNYFNESPP 300 EMSIFDQTMG GMGQVFTGND DIFGDMFLDG QSINIGGDDL MTSSSIKDIG SMFSDFDDSL 360 ISDLLVA*

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MEEFIDFRPL KYTEHKTSVT KYTKKSPPAK LSSSAVDHHH HHHQSLRKVS ICFTDPDATD  60
SSSDEDEQDF LFPRRRVKRF VNEITVEPAC NNTTTGGVSL KDKKRLSSSS ADESQSPAKR  120
PLKASVVAGQ TKKFRGVRQR PWGKWAAEIR DPEQRRRIWL GTFETAEEAA VVYDNAAIRL  180
RGPDALTNFS IPPQEEEEEP EPVLDTKPEI NITTTTTTTT TSCSESTEDF QHLSSPTSVL  240
NLGSEEIQQV QQPFKSAKPE PGISDAPWWH TGFGAGSGET DDSFPLDTPF LDNYFNESPP  300
EMSIFDQTMG GMGQVFTGND DIFGDMFLDG QSINIGGDDL MTSSSIKDIG SMFSDFDDSL  360
ISDLLVA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	3e-22	132	191	1	61	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:16832061}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g085120.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010442886.1	0.0	PREDICTED: ethylene-responsive transcription factor CRF3-like
Swissprot	Q9FK12	1e-170	CRF3_ARATH; Ethylene-responsive transcription factor CRF3
TrEMBL	V4NBA3	1e-173	V4NBA3_EUTSA; Uncharacterized protein
STRING	XP_010442886.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2229	25	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53290.1	1e-145	cytokinin response factor 3

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Raines T, et al. The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis. Plant J., 2016. 85(1): p. 134-47 [PMID:26662515] Jeon J,Cho C,Lee MR,Van Binh N,Kim J CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis. Plant Cell, 2016. 28(8): p. 1828-43 [PMID:27432872]