PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g083490.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MIKC_MADS
Protein Properties Length: 229aa    MW: 25919.2 Da    PI: 9.8608
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g083490.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.11.1e-281969151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien + rqvtfskRr g++KKA+ELSvLCda+va i+fs++g+lyeyss
  Csa11g083490.1 19 KKIENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAIVFSQSGRLYEYSS 69
                    68***********************************************96 PP
2K-box72.71.1e-24951821198
           K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     e+  ++l++e++++ k+i+ L+  +R+l+G++L+s+s+ eLq++ +q+eksl+ +Rs+K el+  q+e+l++ke+el +e k+Lr+++
  Csa11g083490.1  95 ERYLQELKKEMDRMVKKIDLLEVHHRKLMGQGLGSCSVAELQEIDTQIEKSLRIVRSRKAELYAGQLEKLKEKERELLNERKRLREEV 182
                     667899*******************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.4971171IPR002100Transcription factor, MADS-box
SMARTSM004322.8E-401170IPR002100Transcription factor, MADS-box
CDDcd002652.18E-431386No hitNo description
PRINTSPR004043.0E-291333IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-3313100IPR002100Transcription factor, MADS-box
PfamPF003194.0E-262067IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-293348IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-294869IPR002100Transcription factor, MADS-box
PfamPF014866.2E-2398182IPR002487Transcription factor, K-box
PROSITE profilePS5129713.36698188IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MNLGMHMAGK MVRGKIEIKK IENVTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAIVFSQ  60
SGRLYEYSSS EMEKIIERYG KFSNDSFVAE TPQVERYLQE LKKEMDRMVK KIDLLEVHHR  120
KLMGQGLGSC SVAELQEIDT QIEKSLRIVR SRKAELYAGQ LEKLKEKERE LLNERKRLRE  180
EVITHTLILV LASVALNFKA MLGGKTTEGG GSSDVETDLF IGLPVTRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-201183173MEF2 CHIMERA
6byy_B4e-201183173MEF2 CHIMERA
6byy_C4e-201183173MEF2 CHIMERA
6byy_D4e-201183173MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202210GGKTTEGGG
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g083490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1412200.0AY141220.1 Arabidopsis thaliana MADS-box protein AGL71 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019087845.11e-146PREDICTED: MADS-box protein AGL71-like isoform X1
SwissprotQ9LT931e-117AGL71_ARATH; MADS-box protein AGL71
TrEMBLF4KEP61e-121F4KEP6_ARATH; AGAMOUS-like 71
STRINGXP_010442695.11e-137(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.31e-104AGAMOUS-like 71