PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MIKC_MADS

Protein Properties

Length: 173aa MW: 19936.3 Da PI: 10.1077

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g083480.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	83.2	1.7e-26	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien + rqvtfskRr g++KKA+ELSvLCda+va +ifs++g+ ye++s Csa11g083480.1 9 KKIENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAMIFSQKGRSYEFAS 59 68***********************************************86 PP
2	K-box	59.2	1.8e-20	85	168	11	94
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 e+ + l++e + k+ie L+ +R+l+G++L +s+keLq + +q+eksl +Rs+K +l+ +++++l ke+el++e +L Csa11g083480.1 85 EQYVQGLKKETVTMVKKIEVLEVHNRKLMGQGLAFCSVKELQDIATQIEKSLYIVRSTKAKLYEDELKKLEAKERELKDERVRL 168 566788999***********999****************************************************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.2E-38	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	30.6	1	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.0E-28	3	23	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.27E-30	3	75	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.03E-37	3	73	No hit	No description
Pfam	PF00319	1.8E-24	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.0E-28	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.0E-28	38	59	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51297	11.085	88	172	IPR002487	Transcription factor, K-box
Pfam	PF01486	1.1E-19	89	171	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MVRGKIEIKK IENVTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAMIFSQ KGRSYEFASS 60 DIQKTIKRYV EYKRECFGAE THPIEQYVQG LKKETVTMVK KIEVLEVHNR KLMGQGLAFC 120 SVKELQDIAT QIEKSLYIVR STKAKLYEDE LKKLEAKERE LKDERVRLCG KV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	1e-18	1	72	1	72	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-18	1	72	1	72	Myocyte-specific enhancer factor 2B
1tqe_R	1e-18	1	72	1	72	Myocyte-specific enhancer factor 2B
1tqe_S	1e-18	1	72	1	72	Myocyte-specific enhancer factor 2B
5f28_A	2e-18	1	73	1	73	MEF2C
5f28_B	2e-18	1	73	1	73	MEF2C
5f28_C	2e-18	1	73	1	73	MEF2C
5f28_D	2e-18	1	73	1	73	MEF2C
6c9l_A	1e-18	1	72	1	72	Myocyte-specific enhancer factor 2B
6c9l_B	1e-18	1	72	1	72	Myocyte-specific enhancer factor 2B
6c9l_C	1e-18	1	72	1	72	Myocyte-specific enhancer factor 2B
6c9l_D	1e-18	1	72	1	72	Myocyte-specific enhancer factor 2B
6c9l_E	1e-18	1	72	1	72	Myocyte-specific enhancer factor 2B
6c9l_F	1e-18	1	72	1	72	Myocyte-specific enhancer factor 2B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	MADS-box transcription factor that acts with AGL42 and AGL71 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269\|PubMed:21609362}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g083480.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY141221	1e-178	AY141221.1 Arabidopsis thaliana MADS-box protein AGL72 mRNA, complete cds.
GenBank	DQ447061	1e-178	DQ447061.1 Arabidopsis thaliana clone pENTR221-At5g51860 MADS-box protein (At5g51860) mRNA, complete cds.
GenBank	DQ653360	1e-178	DQ653360.1 Arabidopsis thaliana clone 0000017130_0000012002 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010442692.1	1e-121	PREDICTED: MADS-box protein AGL72-like
Refseq	XP_010442693.1	1e-121	PREDICTED: MADS-box protein AGL72-like
Swissprot	Q9FLH5	1e-101	AGL72_ARATH; MADS-box protein AGL72
TrEMBL	R0GNE9	1e-106	R0GNE9_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010442692.1	1e-121	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM78	28	413

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51860.2	2e-87	MIKC_MADS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]