PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Csa11g083350.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 158aa MW: 18028.7 Da PI: 9.4144

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g083350.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.9	4.2e-14	3	54	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++h e Er+RR+++ + ++ Lr+llP + ++K s ++ + +A +YIk+Lq Csa11g083350.1 3 KMMHRETERQRRQEMATLYASLRSLLPLHF--IKGKRSTSDQVNEAANYIKYLQ 54 789***********************65..*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.91	1	53	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.06E-14	3	70	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.89E-10	3	58	No hit	No description
Pfam	PF00010	4.8E-11	3	54	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-10	3	67	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-6	7	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MEKMMHRETE RQRRQEMATL YASLRSLLPL HFIKGKRSTS DQVNEAANYI KYLQRKTKEL 60 SLRRDELMLL SRGSFLGSSN YDSKEEMEMM SRKNHVVVRQ CLVGVEIVFS SGCRSGQPRF 120 SSVLQVLSEN GLYLLNSISS IVDDGLIYTI QAEVNLS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g083350.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK317430	1e-156	AK317430.1 Arabidopsis thaliana AT5G51780 mRNA, complete cds, clone: RAFL24-28-D24.
GenBank	BT010952	1e-156	BT010952.1 Arabidopsis thaliana At5g51780 mRNA, complete cds.
GenBank	BT011640	1e-156	BT011640.1 Arabidopsis thaliana At5g51780 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010442684.1	1e-110	PREDICTED: transcription factor bHLH36-like
Refseq	XP_010442685.1	1e-110	PREDICTED: transcription factor bHLH36-like
Swissprot	Q9FLI1	8e-92	BH036_ARATH; Transcription factor bHLH36
TrEMBL	D7MRI8	2e-95	D7MRI8_ARALL; Basix helix-loop-helix family protein
STRING	XP_010442684.1	1e-109	(Camelina sativa)
STRING	XP_010442685.1	1e-109	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4479	27	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51780.1	3e-94	bHLH family protein