PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g082690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | AP2 | ||||||||
Protein Properties | Length: 393aa MW: 44316.9 Da PI: 8.8817 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.9 | 5.3e-18 | 53 | 103 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdps+ g r++lg+f++a eAa+ +++a+ kl+g Csa11g082690.1 53 HYRGVRRRP-WGKYAAEIRDPSKKG--VRVWLGTFDSAIEAARGYDKAAFKLRG 103 7********.**********97744..*************************98 PP | |||||||
2 | AP2 | 57.2 | 4.1e-18 | 235 | 285 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k r++lg+f+ta eAa+ +++a+ kl+g Csa11g082690.1 235 HYRGVRRRP-WGKYAAEIRDP---NkKGVRVWLGTFDTAMEAARGYDKAAFKLRG 285 7********.**********9...4345*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.3E-30 | 52 | 112 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-21 | 53 | 112 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.0E-36 | 53 | 117 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-11 | 53 | 103 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.999 | 53 | 111 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.98E-28 | 53 | 111 | No hit | No description |
PRINTS | PR00367 | 1.4E-12 | 54 | 65 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-12 | 93 | 113 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.0E-26 | 234 | 286 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.0E-28 | 235 | 301 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.6E-12 | 235 | 285 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.667 | 235 | 295 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-18 | 235 | 287 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.49E-24 | 235 | 286 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MASSHQQQQQ QLEQDQSALD IITQHLLTDF PSLVRDLFPT TTPVAQEEEN QRHYRGVRRR 60 PWGKYAAEIR DPSKKGVRVW LGTFDSAIEA ARGYDKAAFK LRGSKAILNF PLEAGKHEDL 120 GDNNKKTVSL KEKRKRQVTG DESHLSSHKA VKREEVQAQA DACPLTPSSW MGFWDKADSK 180 EMGIFSVPPL SPYPSLGYSS LVVTTTSTLS QRKPPLATIA VPTTAPVAQE DDQRHYRGVR 240 RRPWGKYAAE IRDPNKKGVR VWLGTFDTAM EAARGYDKAA FKLRGTVKRE EAEVPAQAEA 300 CPSSWMGFWD REDSKEMKIF TVSPLSPYPF LGYSQLVLTA QEDDWILIEQ RGSSNLQDHG 360 KEPFEQYDKN PRLWSPLNSA DIHKQMDIAS TL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-26 | 52 | 286 | 4 | 70 | ATERF1 |
3gcc_A | 1e-26 | 52 | 286 | 4 | 70 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 124 | 135 | KKTVSLKEKRKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g082690.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX003248 | 0.0 | JX003248.1 Capsella rubella clone BAC 34G24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010426295.1 | 1e-124 | PREDICTED: ethylene-responsive transcription factor ERF105-like | ||||
Swissprot | Q8VY90 | 1e-104 | EF105_ARATH; Ethylene-responsive transcription factor ERF105 | ||||
TrEMBL | R0GTI4 | 1e-108 | R0GTI4_9BRAS; Uncharacterized protein | ||||
STRING | XP_010426295.1 | 1e-123 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7893 | 26 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 1e-94 | ERF family protein |
Publications ? help Back to Top | |||
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