PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g082690.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 393aa    MW: 44316.9 Da    PI: 8.8817
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g082690.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.3e-1853103255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdps+ g   r++lg+f++a eAa+ +++a+ kl+g
  Csa11g082690.1  53 HYRGVRRRP-WGKYAAEIRDPSKKG--VRVWLGTFDSAIEAARGYDKAAFKLRG 103
                     7********.**********97744..*************************98 PP
2AP257.24.1e-18235285255
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp   + k  r++lg+f+ta eAa+ +++a+ kl+g
  Csa11g082690.1 235 HYRGVRRRP-WGKYAAEIRDP---NkKGVRVWLGTFDTAMEAARGYDKAAFKLRG 285
                     7********.**********9...4345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-3052112IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-2153112IPR016177DNA-binding domain
SMARTSM003803.0E-3653117IPR001471AP2/ERF domain
PfamPF008471.7E-1153103IPR001471AP2/ERF domain
PROSITE profilePS5103223.99953111IPR001471AP2/ERF domain
CDDcd000182.98E-2853111No hitNo description
PRINTSPR003671.4E-125465IPR001471AP2/ERF domain
PRINTSPR003671.4E-1293113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-26234286IPR001471AP2/ERF domain
SMARTSM003808.0E-28235301IPR001471AP2/ERF domain
PfamPF008478.6E-12235285IPR001471AP2/ERF domain
PROSITE profilePS5103221.667235295IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-18235287IPR016177DNA-binding domain
CDDcd000181.49E-24235286No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MASSHQQQQQ QLEQDQSALD IITQHLLTDF PSLVRDLFPT TTPVAQEEEN QRHYRGVRRR  60
PWGKYAAEIR DPSKKGVRVW LGTFDSAIEA ARGYDKAAFK LRGSKAILNF PLEAGKHEDL  120
GDNNKKTVSL KEKRKRQVTG DESHLSSHKA VKREEVQAQA DACPLTPSSW MGFWDKADSK  180
EMGIFSVPPL SPYPSLGYSS LVVTTTSTLS QRKPPLATIA VPTTAPVAQE DDQRHYRGVR  240
RRPWGKYAAE IRDPNKKGVR VWLGTFDTAM EAARGYDKAA FKLRGTVKRE EAEVPAQAEA  300
CPSSWMGFWD REDSKEMKIF TVSPLSPYPF LGYSQLVLTA QEDDWILIEQ RGSSNLQDHG  360
KEPFEQYDKN PRLWSPLNSA DIHKQMDIAS TL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2652286470ATERF1
3gcc_A1e-2652286470ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124135KKTVSLKEKRKR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g082690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX0032480.0JX003248.1 Capsella rubella clone BAC 34G24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010426295.11e-124PREDICTED: ethylene-responsive transcription factor ERF105-like
SwissprotQ8VY901e-104EF105_ARATH; Ethylene-responsive transcription factor ERF105
TrEMBLR0GTI41e-108R0GTI4_9BRAS; Uncharacterized protein
STRINGXP_010426295.11e-123(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78932641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.11e-94ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Moore M,Vogel M,Dietz K
    The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(10): p. 976479
    [PMID:25482793]
  3. Bolt S,Zuther E,Zintl S,Hincha DK,Schmülling T
    ERF105 is a transcription factor gene of Arabidopsis thaliana required for freezing tolerance and cold acclimation.
    Plant Cell Environ., 2017. 40(1): p. 108-120
    [PMID:27723941]
  4. König K,Vaseghi MJ,Dreyer A,Dietz KJ
    The significance of glutathione and ascorbate in modulating the retrograde high light response in Arabidopsis thaliana leaves.
    Physiol Plant, 2018. 162(3): p. 262-273
    [PMID:28984358]