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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Csa11g082690.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family |
AP2 |
| Protein Properties |
Length: 393aa MW: 44316.9 Da PI: 8.8817 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa11g082690.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 56.9 | 5.3e-18 | 53 | 103 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+y+GVr+++ +g+++AeIrdps+ g r++lg+f++a eAa+ +++a+ kl+g
Csa11g082690.1 53 HYRGVRRRP-WGKYAAEIRDPSKKG--VRVWLGTFDSAIEAARGYDKAAFKLRG 103
7********.**********97744..*************************98 PP
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| 2 | AP2 | 57.2 | 4.1e-18 | 235 | 285 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
+y+GVr+++ +g+++AeIrdp + k r++lg+f+ta eAa+ +++a+ kl+g
Csa11g082690.1 235 HYRGVRRRP-WGKYAAEIRDP---NkKGVRVWLGTFDTAMEAARGYDKAAFKLRG 285
7********.**********9...4345*************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 393 aa
Download sequence Send
to blast |
MASSHQQQQQ QLEQDQSALD IITQHLLTDF PSLVRDLFPT TTPVAQEEEN QRHYRGVRRR 60
PWGKYAAEIR DPSKKGVRVW LGTFDSAIEA ARGYDKAAFK LRGSKAILNF PLEAGKHEDL 120
GDNNKKTVSL KEKRKRQVTG DESHLSSHKA VKREEVQAQA DACPLTPSSW MGFWDKADSK 180
EMGIFSVPPL SPYPSLGYSS LVVTTTSTLS QRKPPLATIA VPTTAPVAQE DDQRHYRGVR 240
RRPWGKYAAE IRDPNKKGVR VWLGTFDTAM EAARGYDKAA FKLRGTVKRE EAEVPAQAEA 300
CPSSWMGFWD REDSKEMKIF TVSPLSPYPF LGYSQLVLTA QEDDWILIEQ RGSSNLQDHG 360
KEPFEQYDKN PRLWSPLNSA DIHKQMDIAS TL*
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| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 124 | 135 | KKTVSLKEKRKR |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Moore M,Vogel M,Dietz K
The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
Plant Signal Behav, 2014. 9(10): p. 976479
[PMID:25482793] - Bolt S,Zuther E,Zintl S,Hincha DK,Schmülling T
ERF105 is a transcription factor gene of Arabidopsis thaliana required for freezing tolerance and cold acclimation.
Plant Cell Environ., 2017. 40(1): p. 108-120
[PMID:27723941] - König K,Vaseghi MJ,Dreyer A,Dietz KJ
The significance of glutathione and ascorbate in modulating the retrograde high light response in Arabidopsis thaliana leaves.
Physiol Plant, 2018. 162(3): p. 262-273
[PMID:28984358]
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