PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g082000.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family SBP
Protein Properties Length: 367aa    MW: 40118.5 Da    PI: 7.271
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g082000.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.71.2e-41107184178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +C v+gC++d+s+++eyh+rhkvCevhsk+pvv+++g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+
  Csa11g082000.1 107 ICLVDGCDSDFSNCREYHKRHKVCEVHSKTPVVTINGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 184
                     5**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.6E-33101169IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.043105182IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.22E-39106188IPR004333Transcription factor, SBP-box
PfamPF031101.4E-30108181IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDWNFKLSSG YLSGFDQESV PDLSPMDGSI SFGGSSSSST QPKGDFSFDL KLGRNIGNSS  60
SVFGDTTEQV MSLSKWKESV VAKPDSSRSL SSKRTRGNGL GTNQMPICLV DGCDSDFSNC  120
REYHKRHKVC EVHSKTPVVT INGHKQRFCQ QCSRFHSLEE FDEGKRSCRK RLDGHNRRRR  180
KPQPDHMTRP ANFFTGFQGS KLFEFSGGSH VFPTTSMVNP SWENNLVSVA VAANGSSYGQ  240
NQSYVGSSPA KTGIMFPISS SLNSNRSTGK QFPFLQEEEE SSRTASLCER MTSCIHDSDC  300
ALSLLSSSSS SVPHLLQPPL SLSQEAVETV FYGSGLFENV SAVSDGSVIS GNEAVTLPQT  360
FPFHWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-29101181484squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164181KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g082000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1174750.0AK117475.1 Arabidopsis thaliana At5g50670 mRNA for unknown protein, complete cds, clone: RAFL17-08-M12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010442543.10.0PREDICTED: squamosa promoter-binding-like protein 13A
RefseqXP_010442544.10.0PREDICTED: squamosa promoter-binding-like protein 13A
SwissprotB9DI200.0SP13A_ARATH; Squamosa promoter-binding-like protein 13A
SwissprotP0DI110.0SP13B_ARATH; Squamosa promoter-binding-like protein 13B
TrEMBLD7MQ980.0D7MQ98_ARALL; Uncharacterized protein
STRINGXP_010442543.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41112759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.10.0SBP family protein
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]