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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g072340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 175aa MW: 19789.8 Da PI: 9.7139 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.8 | 9.3e-14 | 91 | 162 | 17 | 96 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 lp +f+++h gk+ + +tl de+g+++e + k+ + l++GW +F+ a++L gD+++F+l++++ f +v + Csa11g072340.1 91 GLPVQFCRSHLGKHDG--VITLIDEEGEEYEAIH--LAKRTG--LSGGWMGFAIAHNLAYGDTLIFELVRSTAF--KVYI 162 59********666544..7***************..555544..************************998888..5555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 9.0E-14 | 75 | 166 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.828 | 75 | 166 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.53E-17 | 89 | 165 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.9E-14 | 91 | 164 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.0E-10 | 91 | 163 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.64E-16 | 92 | 164 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MVVAKQSNYE EFRLKRVEEN KKRMEALNLP KLCQNLNPTS LKTSPMKKRC IPRTPEKAEK 60 QMVDLQRVLN RRREFLAFPA QEHHSGFVSK GLPVQFCRSH LGKHDGVITL IDEEGEEYEA 120 IHLAKRTGLS GGWMGFAIAH NLAYGDTLIF ELVRSTAFKV YITRVGSSGE SSEI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g072340.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB007647 | 3e-57 | AB007647.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJB21. | |||
GenBank | CP002688 | 3e-57 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010481963.1 | 2e-97 | PREDICTED: B3 domain-containing protein At5g42700-like isoform X3 | ||||
Swissprot | Q9FMZ4 | 2e-83 | Y5270_ARATH; B3 domain-containing protein At5g42700 | ||||
TrEMBL | D7MRH4 | 2e-85 | D7MRH4_ARALL; Transcriptional factor B3 family protein | ||||
STRING | XP_010445903.1 | 1e-104 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3744 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 1e-85 | B3 family protein |
Publications ? help Back to Top | |||
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