PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

ERF

Protein Properties

Length: 137aa MW: 14693 Da PI: 7.7662

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g071430.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	66.2	6.3e-21	15	65	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+++AeIrd ++ g r++lg+f+taeeAa+a+++a+ +++g Csa11g071430.1 15 KFRGVRRRP-WGKYAAEIRDSRKHG--ERIWLGTFDTAEEAARAYDQAAYSMRG 65 79*****.******65443..***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	23.525	15	73	IPR001471	AP2/ERF domain
Pfam	PF00847	3.5E-15	15	65	IPR001471	AP2/ERF domain
SMART	SM00380	3.5E-36	15	79	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.85E-24	15	75	IPR016177	DNA-binding domain
CDD	cd00018	1.57E-27	15	74	No hit	No description
Gene3D	G3DSA:3.30.730.10	5.1E-32	15	75	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.7E-11	16	27	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.7E-11	39	55	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MDQGGRGGGG AEHGKFRGVR RRPWGKYAAE IRDSRKHGER IWLGTFDTAE EAARAYDQAA 60 YSMRGQTAIL NFPHEYNMGS GGSSLSAMAG SSSSSASGAS SSSSSSRQVF EFEYLDDSVL 120 EELLEQGENT NKAKKK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	4e-60	1	136	1	131	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	9	GGRGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g071430.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010442022.1	6e-95	PREDICTED: ethylene-responsive transcription factor ERF096-like
Swissprot	Q9LSX0	6e-60	ERF96_ARATH; Ethylene-responsive transcription factor ERF096
TrEMBL	A0A078IN68	1e-60	A0A078IN68_BRANA; BnaC09g17590D protein
TrEMBL	A0A3P6EFT9	1e-60	A0A3P6EFT9_BRAOL; Uncharacterized protein
STRING	XP_010442022.1	2e-94	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04370.1	9e-39	Ethylene-responsive element binding factor 14

Publications ? help Back to Top
Zander M,Thurow C,Gatz C TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression. Plant Physiol., 2014. 165(4): p. 1671-1683 [PMID:24989234]