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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g071040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HSF | ||||||||
Protein Properties | Length: 255aa MW: 29736.4 Da PI: 6.0855 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 116.9 | 1.2e-36 | 19 | 112 | 1 | 103 |
HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 aFl+k+y+i+ed+++++++sws+++nsf+++++e+fa +Lp+ Fkh+nf+SFvRQLn+YgFkkv++e+ weF++++F kg+++ll+ Csa11g071040.1 19 AFLTKTYNIVEDSSTNNIVSWSRDNNSFIIWEPETFALICLPRCFKHNNFSSFVRQLNTYGFKKVNTER---------WEFSNEYFLKGQRNLLK 104 69****************************************************************999.........***************** PP XXXXXXXX CS HSF_DNA-bind 96 kikrkkse 103 +ikr+k++ Csa11g071040.1 105 NIKRRKTS 112 *****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 5.4E-36 | 16 | 109 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.04E-34 | 16 | 109 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.9E-52 | 16 | 109 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.6E-18 | 20 | 43 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.1E-31 | 20 | 109 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.6E-18 | 58 | 70 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 59 | 83 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.6E-18 | 71 | 83 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MEFNIPVPLE GLGETRPTAF LTKTYNIVED SSTNNIVSWS RDNNSFIIWE PETFALICLP 60 RCFKHNNFSS FVRQLNTYGF KKVNTERWEF SNEYFLKGQR NLLKNIKRRK TSSSQTHTQS 120 LKGGRIGPEG EIEELRSDRV ALVLELERLR RKQETMKTYL HSMEEKLKVT EGSRKRKMQG 180 FKNRERRKEV HETIVKAEPE EYLNDTADQY RGVFAYGDEL HIASLEDQGQ EGDEMETDSE 240 GIWKGFVLSE EMCD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 5e-24 | 4 | 111 | 13 | 131 | Heat shock factor protein 1 |
5d5v_B | 5e-24 | 4 | 111 | 13 | 131 | Heat shock factor protein 1 |
5d5v_D | 5e-24 | 4 | 111 | 13 | 131 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 102 | 108 | LKNIKRR |
2 | 172 | 177 | SRKRKM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00541 | DAP | Transfer from AT5G43840 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g071040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ447035 | 1e-131 | DQ447035.1 Arabidopsis thaliana clone pENTR221-At5g43840 heat shock transcription factor family protein (At5g43840) mRNA, complete cds. | |||
GenBank | DQ653345 | 1e-131 | DQ653345.1 Arabidopsis thaliana clone 0000012923_0000009316 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010445879.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: heat stress transcription factor A-6a-like | ||||
Swissprot | Q1PDN3 | 1e-132 | HFA6A_ARATH; Heat stress transcription factor A-6a | ||||
TrEMBL | D7MNK4 | 1e-142 | D7MNK4_ARALL; AT-HSFA6A | ||||
STRING | XP_010445879.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15683 | 14 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43840.1 | 1e-123 | heat shock transcription factor A6A |
Publications ? help Back to Top | |||
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