PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

ERF

Protein Properties

Length: 194aa MW: 21378.2 Da PI: 10.6583

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g070480.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64.7	1.9e-20	25	74	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrdp gk++r++lg+f+taeeAa+a++ a+++++g Csa11g070480.1 25 HFRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEEAARAYDTAAREFRG 74 69*****.******8...557**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	9.2E-33	25	82	IPR001471	AP2/ERF domain
CDD	cd00018	1.42E-29	25	82	No hit	No description
Pfam	PF00847	7.7E-14	25	74	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.24E-22	25	83	IPR016177	DNA-binding domain
PROSITE profile	PS51032	23.881	25	82	IPR001471	AP2/ERF domain
SMART	SM00380	4.2E-40	25	88	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.7E-11	26	37	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.7E-11	48	64	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MAPKQVNGSS NAAAKITLTT RKEVHFRGVR KRPWGRYAAE IRDPGKKTRV WLGTFDTAEE 60 AARAYDTAAR EFRGSKAKTN FPLPGESSAS TMVNDGGDNG SYVNRTAARE MTRQRFPFAC 120 QRERNVVDGY AAAGFFFDPS RAAALRAELS RAYPVRFDPV NIELSIGIRE TVKVAPRREL 180 NLDLNLAPPV VDV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	4e-22	22	83	2	64	ATERF1
3gcc_A	4e-22	22	83	2	64	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269\|PubMed:11487705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g070480.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010441914.1	1e-139	PREDICTED: ethylene-responsive transcription factor 9-like
Swissprot	Q9FE67	1e-114	ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBL	D7MN18	1e-112	D7MN18_ARALL; Uncharacterized protein
STRING	XP_010441914.1	1e-139	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44210.1	2e-94	erf domain protein 9

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]