PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

G2-like

Protein Properties

Length: 287aa MW: 31671.5 Da PI: 8.4742

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g066590.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.5	6.3e-33	24	78	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl Csa11g066590.1 24 KPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGLKGLTLYHLKSHLQKYRL 78 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-31	21	80	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.285	21	81	IPR017930	Myb domain
SuperFamily	SSF46689	2.33E-16	24	81	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.6E-24	24	79	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-9	26	77	IPR001005	SANT/Myb domain
Pfam	PF14379	4.3E-19	130	175	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MERVNLGGLG YDNGGGVMMT RDPKPRLRWT ADLHDRFVDA VAKLGGADKA TPKSVLKLMG 60 LKGLTLYHLK SHLQKYRLGQ QQGKKPNRSD QNKENAGSSY VHFDNCSQGG ISNESRFDNG 120 HHRQSGNVPF AEAMRHQVDA QQRFQEQLEV QKRLQMRMEA QGKYLLTLLE KAQKSIPCGN 180 NNAAETDDKG HFSDFNLALS GLVGDDHKSH KAVGLVTDNI SQLNDDFRLC GDQEKIETGG 240 DAGVIKPESG FVHFDLNSKS GFDLLTSANY GIEMKPNVIA NRHPQV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-20	24	77	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-20	24	77	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-20	24	77	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-20	24	77	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g066590.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493777	0.0	AB493777.1 Arabidopsis thaliana At5g45580 mRNA for hypothetical protein, partial cds, clone: RAAt5g45580.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010441698.1	0.0	PREDICTED: myb family transcription factor PHL11-like
Swissprot	C0SVS4	1e-169	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	R0GD26	1e-175	R0GD26_9BRAS; Uncharacterized protein
STRING	XP_010441698.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12495	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	1e-161	G2-like family protein

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]