PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g065130.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 462aa    MW: 51974.9 Da    PI: 6.5275
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g065130.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52e-12293338454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h e+Er RR+++N++f  Lr ++P+       K++K + Le Av+YI++L
  Csa11g065130.1 293 NHVEAERMRREKLNHRFYALRAVVPNV-----SKMDKTSLLEDAVRYINEL 338
                     799***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.5E-5035227IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.51E-13288339No hitNo description
SuperFamilySSF474594.58E-17289360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.806289338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-16293360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-10293338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-14295344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005509Molecular Functioncalcium ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MNTDDNLSMI EALLTSDLWP PLPPAKHHLS LETTLQKRLH AVLSGTHEPW TYAIFWKPSD  60
FDLSGESVLK WGDGVYNGDD EEKTGRRLRR TIKKTIPSSP EEKERWSKVL RELNSMISGE  120
PFPVVEEDDA KDDVEVTDTE WFFLVSMTWT FGNGSGLAGK AFTTYNPVWV TGSDQIYGSG  180
CDRAKQGGVL GLQTIVCIPS DNGVLELGST EQISQNSNLF NKIRYLFSFE GSKYFSGAPT  240
SAQFRSSIHN PNPNPVYQPI QINLSGEEMV IPEMKPGKKR GRKPMHGREK PLNHVEAERM  300
RREKLNHRFY ALRAVVPNVS KMDKTSLLED AVRYINELKS TAENAESERN AVQNQLNELK  360
KITGRQNATS SVVCNDDKEN VSELKIEVKA MGSDVMIRVE SGKRNHPGAR LMNALMDLEL  420
EVSHASISVM NDLMIQQATV KMGLRIYEQE QLRDMLKSKI N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A7e-50322296194Transcription factor MYC3
4rqw_B7e-50322296194Transcription factor MYC3
4rs9_A7e-50322296194Transcription factor MYC3
4yz6_A7e-50322296194Transcription factor MYC3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00547DAPTransfer from AT5G46830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g065130.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010441529.10.0PREDICTED: transcription factor bHLH28-like
SwissprotQ9LUK70.0BH028_ARATH; Transcription factor bHLH28
TrEMBLR0G8880.0R0G888_9BRAS; Uncharacterized protein
STRINGXP_010441529.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139531624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.10.0NACL-inducible gene 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chen X,Huang H,Qi T,Liu B,Song S
    New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis.
    Plant Signal Behav, 2016. 11(2): p. e1135280
    [PMID:26829586]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Song S, et al.
    MYC5 is Involved in Jasmonate-Regulated Plant Growth, Leaf Senescence and Defense Responses.
    Plant Cell Physiol., 2017. 58(10): p. 1752-1763
    [PMID:29017003]
  5. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]