PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g064680.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 478aa    MW: 53302.1 Da    PI: 7.0194
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g064680.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.13.7e-16741135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Csa11g064680.1  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                    ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.7E-11155IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-12546No hitNo description
CDDcd002021.89E-17663No hitNo description
PfamPF003206.0E-14741IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-12741IPR013088Zinc finger, NHR/GATA-type
PfamPF139196.1E-8242328IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHS RAEGDEIEID  60
DRRAHQRVMI KGMSLNKKIP KRKTYQENFT VKRANLEFST GFKRKALDED ASNRSSSGSV  120
VSNSESCAQS NAWETTFPCK RRTGVGRPKA ASSVEKLTKD LYTILQEQQS SCLSGSSECD  180
LLFENETPML LGHGSVLMRD PHSSGAREEE SEASSFLVES SKSSSVHSAK FGGKAIKQEL  240
LKRSKSQVLG RHSLLLCSID LKAVFNFDEF IEKFTEEEQK KLMKLLPQVD SVDRPDSLRS  300
MFESSQFKEN FSLFQQLVAD GVFETSSSSG SKLEDIKTLA KLALSDPNKS HLLESYYMLK  360
EQRKEIEDSV TTPSRVSNLS PSNNNSLVTI ERPCESLNQN FSETRVVMRS PKEVMKIRSN  420
HIKTEEILEN SVSSFNPMSC GGSLVFSYED NDISDQDLLL DVPSNGSFPQ AELLHMI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g064680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0202590.0BT020259.1 Arabidopsis thaliana At5g47140 gene, complete cds.
GenBankBT0204500.0BT020450.1 Arabidopsis thaliana At5g47140 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010441495.10.0PREDICTED: GATA transcription factor 27-like isoform X1
SwissprotQ5PP380.0GAT27_ARATH; GATA transcription factor 27
TrEMBLD7MPX30.0D7MPX3_ARALL; Zinc finger family protein
STRINGXP_010441495.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.10.0GATA transcription factor 27