PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g059390.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 469aa    MW: 51048.1 Da    PI: 9.2149
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g059390.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.99.4e-10141165126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +k + C+++ + G Ck+G++C+F H+
  Csa11g059390.1 141 PKKSVCKYWKA-GNCKRGEQCQFLHS 165
                     68999******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.5E-8140166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.92140167IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-7141165IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-7141165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-7142165IPR000571Zinc finger, CCCH-type
SMARTSM003203.9E-4171210IPR001680WD40 repeat
SuperFamilySSF509782.66E-46172219IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.103.1E-44173462IPR015943WD40/YVTN repeat-like-containing domain
PROSITE profilePS5008213.215178219IPR001680WD40 repeat
PROSITE profilePS5029419.67178382IPR017986WD40-repeat-containing domain
PfamPF117151.0E-5193228No hitNo description
PROSITE patternPS006780197211IPR019775WD40 repeat, conserved site
PRINTSPR003201.9E-7197211IPR020472G-protein beta WD-40 repeat
SMARTSM0032058250287IPR001680WD40 repeat
SuperFamilySSF509782.66E-46257465IPR017986WD40-repeat-containing domain
SMARTSM003202.7E-4295333IPR001680WD40 repeat
PfamPF004001.0E-5297333IPR001680WD40 repeat
PROSITE profilePS5008210.843317342IPR001680WD40 repeat
PROSITE patternPS006780320334IPR019775WD40 repeat, conserved site
PRINTSPR003201.9E-7320334IPR020472G-protein beta WD-40 repeat
SMARTSM003201.7E-5336373IPR001680WD40 repeat
PfamPF004000.0014338372IPR001680WD40 repeat
PROSITE profilePS500829.84343382IPR001680WD40 repeat
PRINTSPR003201.9E-7360374IPR020472G-protein beta WD-40 repeat
SMARTSM00320220379421IPR001680WD40 repeat
SMARTSM003202.8424461IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MDEATVLDSL VQSSKVGIFS MFSMNYVAPR RYSQGRNFGV KRQQDFAADV VSRRPYAPYD  60
SAMRKSPNKL SRNLVWTSKE YKPPEVNRPR KYEANGSTKP PILGKGCSSV PNQPRKNAAY  120
GPRSSPISDT RGPVSRANSS PKKSVCKYWK AGNCKRGEQC QFLHSWSCFP GLAMVAALEG  180
HRKDIKGITL PQGSDKLFSV SGDGTLRIWD CHTGQCVHTI NLQAAAGSLI SEGPWVFLGL  240
QNAVKAFNVQ TSKDLHLDGV VGQVHAMTVA NGMLFAGTSS GSISVWKATD SESDPFKYLT  300
SLEGHHSGEV TCFVVGGQLL YSGSVDKTIK VWDLNTLQCI MTLKQHTDTV TSLLYWDKCL  360
ISSSLDGTIK VWACSENDVL KVTHTRRQEQ SVVHALCGMH DAEAKPIIFC SYQNGTVGIY  420
DLPSFEERGK MFATDTISTL TVGPGGLLFS GDKGGNLRVW SLAAGPKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A8e-211664686320Tako8
6g6n_A8e-211664686320Tako8
6g6n_B8e-211664686320Tako8
6g6n_C8e-211664686320Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g059390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010441252.10.0PREDICTED: zinc finger CCCH domain-containing protein 59-like isoform X1
SwissprotQ9FKR90.0C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLD7MJ150.0D7MJ15_ARALL; WD-40 repeat family protein
STRINGXP_010441252.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.10.0C3H family protein