PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

M-type_MADS

Protein Properties

Length: 227aa MW: 25764.2 Da PI: 10.2119

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g057180.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	62.9	3.5e-20	7	56	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +++++s v +s+R+++++ KAe LSvLC+++v+vi+++++g l+++++ Csa11g057180.1 7 SSSSSSYPLVALSNRLETVFRKAEQLSVLCQIDVCVIYYGPKGDLKTFPN 56 688899999***************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	2.49E-12	16	89	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.7E-11	16	54	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	10.61	16	58	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MRSLPSSSSS SSYPLVALSN RLETVFRKAE QLSVLCQIDV CVIYYGPKGD LKTFPNEKEK 60 VRNMAMRYSR LNDSLRSKKR VSLSEFLKDK GLENPNKRRK TTTSPKKNYV DVLKYPISDH 120 YSPDQIPQLI QSLQLNLSTF QQRLRFLVSQ EKHKQLLDHH HQSFVPSTSS SSLTTPSLNP 180 SQQFSLFVYN HGDNTLSQIP VSASNLNQDF SALLQESQLK NGHNMS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	99	KKRVSLSEFLKDKGLENPNKRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g057180.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010445670.1	1e-164	PREDICTED: agamous-like MADS-box protein AGL75
Swissprot	Q9FLL0	4e-73	AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBL	R0F283	6e-82	R0F283_9BRAS; Uncharacterized protein
STRING	XP_010445670.1	1e-163	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41200.1	3e-69	AGAMOUS-like 75

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]