PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g055350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB | ||||||||
Protein Properties | Length: 226aa MW: 25426.6 Da PI: 9.6411 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.5 | 4.1e-15 | 15 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 r+ W Ed++l ++v+++G+++W+ Ia++++ gRt+k c+ rw +l Csa11g055350.1 15 RDQWKLSEDLKLRELVAEYGPRNWNQIAEKIQ-GRTGKTCRARWSRHL 61 789*****************************.***********8775 PP | |||||||
2 | Myb_DNA-binding | 36 | 1.6e-11 | 67 | 109 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++++T E+ +l++a ++lG++ W++Ia+ ++ gR+++ +++ w Csa11g055350.1 67 KKSFTNKEEAILLEAYEKLGSK-WSLIAKLLP-GRSDEAVINNWT 109 5789******************.*********.*******99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.083 | 10 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.8E-25 | 14 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-12 | 14 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 17 | 69 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 1.6E-14 | 18 | 75 | No hit | No description |
CDD | cd00167 | 2.48E-11 | 18 | 61 | No hit | No description |
SMART | SM00717 | 3.4E-10 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 13.022 | 66 | 116 | IPR017930 | Myb domain |
CDD | cd00167 | 4.10E-7 | 69 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-16 | 70 | 115 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MNHEERNKEK ISSSRDQWKL SEDLKLRELV AEYGPRNWNQ IAEKIQGRTG KTCRARWSRH 60 LDPMISKKSF TNKEEAILLE AYEKLGSKWS LIAKLLPGRS DEAVINNWTR IMKRKTRKQS 120 TSPHELTTND TTEDSASDES REINNSNRKM PKEETTDLTE AMQYSALHHH LSIVPAVPLA 180 MSAPPHVSIS QPSSSSSSSS LPSKAEDTKA KIPPKFIDFL GVGDS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-29 | 18 | 116 | 30 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g055350.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010445650.1 | 1e-165 | PREDICTED: myb-related protein B-like | ||||
Swissprot | Q9SEZ4 | 3e-40 | MY105_ARATH; Transcription factor MYB105 | ||||
TrEMBL | R0H196 | 4e-88 | R0H196_9BRAS; Uncharacterized protein | ||||
STRING | XP_010445650.1 | 1e-164 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19099 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G29020.2 | 2e-49 | myb domain protein 110 |
Publications ? help Back to Top | |||
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