PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 163aa MW: 18929.1 Da PI: 6.6258

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g053830.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37	7.2e-12	71	118	5	52
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 +++rrk +NRe+ rrsR RK+ +++eL v L +eN++L +l++ Csa11g053830.1 71 RKQRRKVSNRESERRSRMRKQRQVDELWSQVMWLRNENHQLLHKLNRV 118 689***************************************999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.7E-8	67	131	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.128	69	132	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.5E-10	71	119	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.99E-10	71	121	No hit	No description
Gene3D	G3DSA:1.20.5.170	8.5E-8	71	144	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MQPSMNIFSL HGCPPSYLSH FPTSSPFCVD GQNPNPFYTF QTSVNSPQFM SLSNSTSDEA 60 EENHSDIVNE RKQRRKVSNR ESERRSRMRK QRQVDELWSQ VMWLRNENHQ LLHKLNRVLE 120 SHEMVIEENA QLKEETSELK HVISDMQLQI QSPFSCFSGS TL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	83	90	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g053830.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010441010.1	1e-117	PREDICTED: basic leucine zipper 43-like
Swissprot	Q9FMC2	5e-90	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	R0H248	2e-96	R0H248_9BRAS; Uncharacterized protein
STRING	XP_010441010.1	1e-117	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3112	26	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G38800.1	7e-76	basic leucine-zipper 43

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]