PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g041480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GeBP | ||||||||
Protein Properties | Length: 324aa MW: 35400.8 Da PI: 5.4564 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 115.1 | 4.3e-36 | 133 | 223 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 fqrlwse+De +lLqG+idfka++g+sp+dd+++f++++k++isf+vsk q+ +Kir+LKkK+ +kk ++++hd+k+++l+k iW Csa11g041480.1 133 PFQRLWSEDDETSLLQGMIDFKAEKGTSPYDDMNGFFDMAKNNISFDVSKIQFGDKIRSLKKKYFAIQKK------GGLESSHDKKCLGLAKYIW 221 69********************************************************************......67889************** PP DUF573 97 gs 98 gs Csa11g041480.1 222 GS 223 95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 6.5E-27 | 134 | 222 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MAKKVLNPLE DPPTASSSGE EEVETSSGEE DVEQISNSSS SEENDPKDLA TSKTLKTPPD 60 TASSTESEGS ESESEPSPEK TVAVVTSKPK KKEGNESTAA KPGKKRGSEA ETTSKDMHVK 120 KAKKVSGDDE KKPFQRLWSE DDETSLLQGM IDFKAEKGTS PYDDMNGFFD MAKNNISFDV 180 SKIQFGDKIR SLKKKYFAIQ KKGGLESSHD KKCLGLAKYI WGSDGMALES AVKLANGKLK 240 SGGDNVGEDK EVVSLFEKSF LVRTIAGLGV DAFSVKEKWS KVSVETKKRI EEKLKLVEAK 300 EYELLRLKSD TLKEVAYVMT RGI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g041480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010440563.1 | 0.0 | PREDICTED: probable transcription factor At1g44810 | ||||
Swissprot | Q9LPF0 | 1e-104 | STKLB_ARATH; Probable transcription factor At1g44810 | ||||
TrEMBL | R0G5T3 | 1e-108 | R0G5T3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010440563.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM313 | 28 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G44810.1 | 1e-93 | DNA-binding storekeeper protein-related transcriptional regulator |
Publications ? help Back to Top | |||
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