PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa11g041480.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GeBP

Protein Properties

Length: 324aa MW: 35400.8 Da PI: 5.4564

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g041480.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	115.1	4.3e-36	133	223	2	98
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 fqrlwse+De +lLqG+idfka++g+sp+dd+++f++++k++isf+vsk q+ +Kir+LKkK+ +kk ++++hd+k+++l+k iW Csa11g041480.1 133 PFQRLWSEDDETSLLQGMIDFKAEKGTSPYDDMNGFFDMAKNNISFDVSKIQFGDKIRSLKKKYFAIQKK------GGLESSHDKKCLGLAKYIW 221 69******************************************************************......67889************ PP DUF573 97 gs 98 gs Csa11g041480.1 222 GS 223 95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	6.5E-27	134	222	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MAKKVLNPLE DPPTASSSGE EEVETSSGEE DVEQISNSSS SEENDPKDLA TSKTLKTPPD 60 TASSTESEGS ESESEPSPEK TVAVVTSKPK KKEGNESTAA KPGKKRGSEA ETTSKDMHVK 120 KAKKVSGDDE KKPFQRLWSE DDETSLLQGM IDFKAEKGTS PYDDMNGFFD MAKNNISFDV 180 SKIQFGDKIR SLKKKYFAIQ KKGGLESSHD KKCLGLAKYI WGSDGMALES AVKLANGKLK 240 SGGDNVGEDK EVVSLFEKSF LVRTIAGLGV DAFSVKEKWS KVSVETKKRI EEKLKLVEAK 300 EYELLRLKSD TLKEVAYVMT RGI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g041480.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010440563.1	0.0	PREDICTED: probable transcription factor At1g44810
Swissprot	Q9LPF0	1e-104	STKLB_ARATH; Probable transcription factor At1g44810
TrEMBL	R0G5T3	1e-108	R0G5T3_9BRAS; Uncharacterized protein
STRING	XP_010440563.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM313	28	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G44810.1	1e-93	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]