PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g033300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | FAR1 | ||||||||
Protein Properties | Length: 468aa MW: 53779.6 Da PI: 7.7661 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 64.3 | 3.4e-20 | 79 | 161 | 3 | 90 |
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++Y+ + GF+vrk++ + + ++++++ ++vCskeg+r+e++++ ++ +++ tr+gC+a+++ ++k++++++ ++e++HnH+l+ Csa11g033300.1 79 YQKYGGSHGFDVRKQRRTIK--KEKVVRLRYVCSKEGYRKETNDE---KSYSQPITRCGCNAHMTCYLQKNERYKIVSFEENHNHDLV 161 9************9986665..7779**************98777...999***********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.8E-17 | 78 | 161 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 8.654 | 238 | 285 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 3.1E-4 | 259 | 285 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 5.6E-4 | 260 | 287 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MENSYISEDF SPKEDYDSIS VDTASVSESV EKEDNIANNE NYVQTEEVVV LEANKESELK 60 DELCIGMEFS SDETAHTTYQ KYGGSHGFDV RKQRRTIKKE KVVRLRYVCS KEGYRKETND 120 EKSYSQPITR CGCNAHMTCY LQKNERYKIV SFEENHNHDL VRTPMKHLLR GNRALSISKK 180 KHADDAEMSG ISAKATVEMM SREEVYTPEV FSLFQRQYIV IGDYVATKVS KSEMVYEYKV 240 SYRGVAREHL VNYDAISQTI HCGCMKFSFA GILCRHALKV LDKKNVRRIP STYILTRWSK 300 EAKTRRISYY HPKTFDEREK QSIGRRYSHI CRTFREIASV AADHIELTLC ANEDAIQLLR 360 KLEEKKKELV KANAWMPQSS DVGLVEEEEE VEDKEVPNAR GIKRKASVGR PKNQKVGPHG 420 RYLNVLEDTT LTPDTQLSVT TTSPTLHHES FISQVFKEYD KSYGGPS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g033300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010445346.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | V4M602 | 1e-117 | V4M602_EUTSA; Uncharacterized protein (Fragment) | ||||
STRING | XP_010445346.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6200 | 6 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-15 | FAR1-related sequence 5 |