PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa11g033300.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

FAR1

Protein Properties

Length: 468aa MW: 53779.6 Da PI: 7.7661

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g033300.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.3	3.4e-20	79	161	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++Y+ + GF+vrk++ + + ++++++ ++vCskeg+r+e++++ ++ +++ tr+gC+a+++ ++k++++++ ++e++HnH+l+ Csa11g033300.1 79 YQKYGGSHGFDVRKQRRTIK--KEKVVRLRYVCSKEGYRKETNDE---KSYSQPITRCGCNAHMTCYLQKNERYKIVSFEENHNHDLV 161 9**********9986665..7779**********98777...999*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.8E-17	78	161	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.654	238	285	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.1E-4	259	285	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.6E-4	260	287	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MENSYISEDF SPKEDYDSIS VDTASVSESV EKEDNIANNE NYVQTEEVVV LEANKESELK 60 DELCIGMEFS SDETAHTTYQ KYGGSHGFDV RKQRRTIKKE KVVRLRYVCS KEGYRKETND 120 EKSYSQPITR CGCNAHMTCY LQKNERYKIV SFEENHNHDL VRTPMKHLLR GNRALSISKK 180 KHADDAEMSG ISAKATVEMM SREEVYTPEV FSLFQRQYIV IGDYVATKVS KSEMVYEYKV 240 SYRGVAREHL VNYDAISQTI HCGCMKFSFA GILCRHALKV LDKKNVRRIP STYILTRWSK 300 EAKTRRISYY HPKTFDEREK QSIGRRYSHI CRTFREIASV AADHIELTLC ANEDAIQLLR 360 KLEEKKKELV KANAWMPQSS DVGLVEEEEE VEDKEVPNAR GIKRKASVGR PKNQKVGPHG 420 RYLNVLEDTT LTPDTQLSVT TTSPTLHHES FISQVFKEYD KSYGGPS*

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MENSYISEDF SPKEDYDSIS VDTASVSESV EKEDNIANNE NYVQTEEVVV LEANKESELK  60
DELCIGMEFS SDETAHTTYQ KYGGSHGFDV RKQRRTIKKE KVVRLRYVCS KEGYRKETND  120
EKSYSQPITR CGCNAHMTCY LQKNERYKIV SFEENHNHDL VRTPMKHLLR GNRALSISKK  180
KHADDAEMSG ISAKATVEMM SREEVYTPEV FSLFQRQYIV IGDYVATKVS KSEMVYEYKV  240
SYRGVAREHL VNYDAISQTI HCGCMKFSFA GILCRHALKV LDKKNVRRIP STYILTRWSK  300
EAKTRRISYY HPKTFDEREK QSIGRRYSHI CRTFREIASV AADHIELTLC ANEDAIQLLR  360
KLEEKKKELV KANAWMPQSS DVGLVEEEEE VEDKEVPNAR GIKRKASVGR PKNQKVGPHG  420
RYLNVLEDTT LTPDTQLSVT TTSPTLHHES FISQVFKEYD KSYGGPS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g033300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010445346.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	V4M602	1e-117	V4M602_EUTSA; Uncharacterized protein (Fragment)
STRING	XP_010445346.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6200	6	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-15	FAR1-related sequence 5