 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Csa11g032920.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 324aa MW: 36231.9 Da PI: 10.1967 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa11g032920.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 60.7 | 2.3e-19 | 164 | 218 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++k+q +Lee F+ +++++ ++++ LAk+lgL rqV vWFqNrRa+ k
Csa11g032920.1 164 RKKLRLSKDQSAILEETFKDHSTLNPKQKQALAKQLGLRARQVEVWFQNRRARTK 218
788899***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 124 | 7.1e-40 | 164 | 253 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
+kk+rlsk+q+++LEe+F+ +++L+p++K++la++Lgl++rqv+vWFqnrRARtk+kq+E+d+e+L+r++++l+een+rL+kev+eLr +l
Csa11g032920.1 164 RKKLRLSKDQSAILEETFKDHSTLNPKQKQALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLRRCCENLTEENRRLQKEVTELR-AL 253
69*************************************************************************************9.55 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 324 aa
Download sequence Send
to blast |
PIHLSLSLSL KRKKSRKLYC KNRVFLVVVL EKKKMMLEKD DLGLSLGLNY QKKQMNLNSN 60
PSVVSVTPSS SSFGLPRRSS WNESFTSSVP NSDSSQKETR TFIRGIDVNR PPSTAEYGDE 120
DAGVSSPNST VSSSTGKRSE REEDTDPQGS RGGISDDEDG DNSRKKLRLS KDQSAILEET 180
FKDHSTLNPK QKQALAKQLG LRARQVEVWF QNRRARTKLK QTEVDCEFLR RCCENLTEEN 240
RRLQKEVTEL RALKLSPQFY MHMSPPTTLT MCPSCEHVSV PPPPQPPQAA TSAHHRGSLP 300
VNAWAPAARI SHGLTFDALR PRS*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 162 | 168 | SRKKLRL |
| 2 | 212 | 220 | RRARTKLKQ |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in the negative regulation of cell elongation and specific cell proliferation processes such as lateral root formation and secondary growth of the vascular system. Acts as mediator of the red/far-red light effects on leaf cell expansion in the shading response. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. Negatively regulates its own expression. {ECO:0000269|PubMed:10477292, ECO:0000269|PubMed:11260495, ECO:0000269|PubMed:8449400}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Rapidly and strongly induced by lowering the ratio of red to far-red light. {ECO:0000269|PubMed:8106086}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AF375453 | 0.0 | AF375453.1 Arabidopsis thaliana AT4g16780/dl4415w mRNA, complete cds. |
| GenBank | ATHHOMEOA | 0.0 | M90394.1 Arabidopsis thaliana heomeobox protein (HAT4) mRNA, complete cds. |
| GenBank | X68145 | 0.0 | X68145.1 A.thaliana Athb-2 mRNA. |
| Publications
? help Back to Top |
- Carabelli M,Turchi L,Ruzza V,Morelli G,Ruberti I
Homeodomain-Leucine Zipper II family of transcription factors to the limelight: central regulators of plant development.
Plant Signal Behav, 2014.
[PMID:23838958] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Francisco M, et al.
Genome Wide Association Mapping in Arabidopsis thaliana Identifies Novel Genes Involved in Linking Allyl Glucosinolate to Altered Biomass and Defense.
Front Plant Sci, 2016. 7: p. 1010
[PMID:27462337] - Müller-Moulé P, et al.
YUCCA auxin biosynthetic genes are required for Arabidopsis shade avoidance.
PeerJ, 2016. 4: p. e2574
[PMID:27761349] - Ivarson E, et al.
Effects of Overexpression of WRI1 and Hemoglobin Genes on the Seed Oil Content of Lepidium campestre.
Front Plant Sci, 2016. 7: p. 2032
[PMID:28119714] - Kasulin L, et al.
A single haplotype hyposensitive to light and requiring strong vernalization dominates Arabidopsis thaliana populations in Patagonia, Argentina.
Mol. Ecol., 2017. 26(13): p. 3389-3404
[PMID:28316114] - Singh M,Gupta A,Singh D,Khurana JP,Laxmi A
Arabidopsis RSS1 Mediates Cross-Talk Between Glucose and Light Signaling During Hypocotyl Elongation Growth.
Sci Rep, 2017. 7(1): p. 16101
[PMID:29170398]
|
