PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g032620.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 433aa    MW: 47837.8 Da    PI: 7.6533
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g032620.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.72.4e-2134123186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +Wt++e+ aL++a+++++ +lrrg+l++++W++v++++      +g  +s++qC++k+e+l+kry+ +k+++ +r  + ss++ +f  l+
  Csa11g032620.1  34 CWTDEETAALVNAYKDKWFALRRGNLRAADWDDVAAAVssssTVGGTPKSAIQCRHKIEKLRKRYRGEKQRALNRPGKFSSSWDLFPILD 123
                     8*************************************9998899******************************9999*******9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.3E-2133125No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MSIPDDGSPV GMAIDSSTAV TVATTTTRRV PPPCWTDEET AALVNAYKDK WFALRRGNLR  60
AADWDDVAAA VSSSSTVGGT PKSAIQCRHK IEKLRKRYRG EKQRALNRPG KFSSSWDLFP  120
ILDAMGFAPV TPAAVETYDP DVDHDDESNG LDGFRARSKR SGKFSGGYSD SPREGYGVRS  180
RARSNMKLYS GFKSEFDSDH DSGSGFGLKR KYNGNQKVSS DFDADSDDEI VLVPKTTRLR  240
THGKPSSGDF SHSGGGGFPL KSFGDRSFAS HGFKPKNFSK TEPNFSQDLD YDDEYDDDRA  300
EREGFNPRIQ SSRSSSRGSG YSRKEGSYPR NAGVSNGYGS SSRFKHEQMN AAAEVESDPI  360
DEVVSSVKML TEMFVRVENS KMEMMREMEK SRMEMELKHC QMMLESQQQI IGAFAEALSE  420
KKSTTNARRP VS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g032620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1182450.0AK118245.1 Arabidopsis thaliana At4g17060 mRNA for unknown protein, complete cds, clone: RAFL19-55-A07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010440063.10.0PREDICTED: uncharacterized protein LOC104723393
SwissprotO235500.0FRIP2_ARATH; Protein FIP2
TrEMBLA0A178UUN70.0A0A178UUN7_ARATH; FIP2
STRINGXP_010440063.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104831828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.11e-21Trihelix family protein
Publications ? help Back to Top
  1. Sakai T, et al.
    The wavy growth 3 E3 ligase family controls the gravitropic response in Arabidopsis roots.
    Plant J., 2012. 70(2): p. 303-14
    [PMID:22122664]