PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

ERF

Protein Properties

Length: 286aa MW: 32176.2 Da PI: 4.9025

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g031180.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.1	2.5e-19	140	190	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+++AeIrdp + + +r++lg+f ta eAa+a+++a+ +l+g Csa11g031180.1 140 HYRGVRMRP-WGKFAAEIRDP---NrRGTRVWLGTFETAIEAARAYDKAAFRLRG 190 69*****.******9...4334***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	3.66E-22	140	200	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	9.2E-32	140	199	IPR001471	AP2/ERF domain
CDD	cd00018	1.09E-29	140	198	No hit	No description
Pfam	PF00847	2.0E-13	140	190	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.96	140	198	IPR001471	AP2/ERF domain
SMART	SM00380	5.3E-35	140	204	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.2E-10	141	152	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.2E-10	164	180	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MATPNEASAL FLIKKYLLDE LSPLPNTNQW MNEPDFSIFG SSDQTGFEFS QFETKPEIID 60 LVTPKPDISG FDVKSEAPLE PYDSFTFQSN QHRVVSQSNR KPPLKIAPPN RTKWIQFATG 120 NPKPEKNVPA VAAVAEEKWH YRGVRMRPWG KFAAEIRDPN RRGTRVWLGT FETAIEAARA 180 YDKAAFRLRG SKAIVNFPLE VGMWNPCAED GHENKRKRDD DEEEVTVVEK VQKTEESHAV 240 SCGGENVESD LTAIDDWDLT EFLSMPLLSP LSPHPPFGFP QLTVV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-28	140	201	5	66	ATERF1
3gcc_A	2e-28	140	201	5	66	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:9756931}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g031180.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL161546	0.0	AL161546.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 46.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBank	Z97343	0.0	Z97343.1 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010439994.1	0.0	PREDICTED: ethylene-responsive transcription factor 6-like
Swissprot	Q8VZ91	1e-153	EF103_ARATH; Ethylene-responsive transcription factor 6
TrEMBL	D7MBY0	1e-157	D7MBY0_ARALL; Uncharacterized protein
STRING	XP_010439994.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17490.1	1e-128	ethylene responsive element binding factor 6