PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

ERF

Protein Properties

Length: 318aa MW: 34753.1 Da PI: 5.5492

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g031170.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.1	1.3e-19	149	199	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r++lg+f tae+Aa a+++a+ +++g Csa11g031170.1 149 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEDAALAYDRAAFRMRG 199 8******.*******9987..***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	2.3E-32	148	207	IPR001471	AP2/ERF domain
CDD	cd00018	6.60E-32	148	207	No hit	No description
SuperFamily	SSF54171	2.81E-23	149	209	IPR016177	DNA-binding domain
SMART	SM00380	6.8E-41	149	213	IPR001471	AP2/ERF domain
Pfam	PF00847	8.4E-14	149	199	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.276	149	207	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.9E-11	150	161	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.9E-11	173	189	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MSMTADSQSD YAFLESIRRH LLGETEARLS ESMTSSGEQS CTTTCNSVKP VYGRNPSFGK 60 LYPCFTESWG DLPLKENDSE DMLVYGILND AFHGGWEPSS SSSDDDRSSF PAVKIETTES 120 FAAVDSVPAK KETSPALPVA AAAVAKGKHY RGVRQRPWGK FAAEIRDPAK NGARVWLGTF 180 ETAEDAALAY DRAAFRMRGS RALLNFPLRV NSGEPDPVRI KSKRASSSSS YAGAPKKRRT 240 AAAGDGTDKG LTVKCEVVEI FINYDMVIEA FAELLKADRF APKVVRVTFM TSPSDLEVKD 300 IEFKELPQEI ETSVYVP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-44	145	214	1	70	ATERF1
3gcc_A	2e-44	145	214	1	70	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:11950980, ECO:0000269\|PubMed:9756931}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g031170.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:11950980}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010439993.1	0.0	PREDICTED: ethylene-responsive transcription factor 1A-like
Swissprot	O80337	1e-146	EF100_ARATH; Ethylene-responsive transcription factor 1A
TrEMBL	R0F6Q2	1e-149	R0F6Q2_9BRAS; Uncharacterized protein
STRING	XP_010439993.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17500.1	1e-128	ethylene responsive element binding factor 1

Publications ? help Back to Top
Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox. Plant Physiol., 2004. 136(1): p. 2621-32 [PMID:15375207] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]