PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g030860.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 441aa    MW: 49536.5 Da    PI: 4.9413
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g030860.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1087.3e-34311212102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y+++ed++++ ++sws ++nsf+++d++efa+ +Lpk+Fkh+n++SF+RQLn+YgF+kv+++           eF+++ F +g+k+ll+k
  Csa11g030860.1  31 FLSKTYDMVEDPATDAIVSWSPTNNSFIIWDQSEFARYLLPKHFKHNNLSSFIRQLNTYGFRKVSERY----------EFANEDFLRGQKHLLKK 115
                     9********************999****************************************9865..........8**************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i rk+s
  Csa11g030860.1 116 ISRKRS 121
                     ***987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.9E-5627119IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.67E-3328119IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.0E-3728119IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.0E-193154IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3031119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-196981IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407094IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-198294IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MDGVVAGGES VPPRNPHPAT LLSANALPPP FLSKTYDMVE DPATDAIVSW SPTNNSFIIW  60
DQSEFARYLL PKHFKHNNLS SFIRQLNTYG FRKVSERYEF ANEDFLRGQK HLLKKISRKR  120
SVQGGHGGGT QSQQLSQGHG SLAALSSCVE VGRFGLEEEV EQLKRDKNVL MQELVKLRQQ  180
QQTTDNKLQV MVKRLQVMEL RQQQIMSFLA KAVQNPTFLS QFIQKQADNN MHVTEANKKR  240
RLREDTTQNQ SHIHGSAASD GHGQIVKYQP LRSDSVMWNM MKTDDEYQFL DGFSSPNRVS  300
GVTLQEVLPT TTSGQSQAYP PTASGDHLSY LPSTSTPLPD TVMPQLTRES INDFPTENYM  360
DTENIVSEPF ISPSPFLDGI EDPDIDELMD NCELLEECLA EIPVLGDETT TLENSNSTND  420
RHMDKFIEEL GLLTSKTEQL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-2931196129Heat shock factor protein 1
5d5v_B1e-2931196129Heat shock factor protein 1
5d5v_D1e-2931196129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g030860.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:7948881}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2293470.0AK229347.1 Arabidopsis thaliana mRNA for heat shock transcription factor HSF1, partial cds, clone: RAFL16-59-L13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010439948.10.0PREDICTED: heat stress transcription factor A-1a-like
SwissprotP411510.0HFA1A_ARATH; Heat stress transcription factor A-1a
TrEMBLD7M9G00.0D7M9G0_ARALL; Heat shock factor
STRINGXP_010439948.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151011619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.10.0heat shock factor 1
Publications ? help Back to Top
  1. Hsu SF,Jinn TL
    AtHSBP functions in seed development and the motif is required for subcellular localization and interaction with AtHSFs.
    Plant Signal Behav, 2010. 5(8): p. 1042-4
    [PMID:20657173]
  2. Liu HC,Charng YY
    Common and distinct functions of Arabidopsis class A1 and A2 heat shock factors in diverse abiotic stress responses and development.
    Plant Physiol., 2013. 163(1): p. 276-90
    [PMID:23832625]
  3. Li S, et al.
    HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis.
    Plant Cell, 2014. 26(4): p. 1764-1780
    [PMID:24728648]
  4. Muench M,Hsin CH,Ferber E,Berger S,Mueller MJ
    Reactive electrophilic oxylipins trigger a heat stress-like response through HSFA1 transcription factors.
    J. Exp. Bot., 2016. 67(21): p. 6139-6148
    [PMID:27811081]