 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Csa11g030670.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
bHLH |
| Protein Properties |
Length: 575aa MW: 62095.6 Da PI: 4.5401 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa11g030670.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 39.5 | 1e-12 | 454 | 499 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L
Csa11g030670.1 454 NHVEAERQRREKLNQRFYSLRAVVPNV-----SKMDKASLLGDAISYINEL 499
799***********************6.....5***************998 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 575 aa
Download sequence Send
to blast |
MSPTSVQLTD YHLDQSTDGP TNLWSTEDDA SVMEAFIGGS DHSSLFPPLP PPPLAPPALS 60
QVNEDTLQQR LQALIEGANE SWAYAVFWQL SYDFAGEDVE GGGVGGVGLT NNNNNTALLG 120
WGDGYYKGEE EKSRKKKTNP ASAAEQEHRK RVVRELNALI SGGGGEVVNN GGSDEAGDEE 180
VTDTEWFFLV SMTQSFVYGT GLPGQAFSSS NTIWLSGSNA LAGSSCERAR QGQIYGLQTM 240
VCVPCENGVV ELGSSEVIHQ SSDLVDKVDT FFNFNNGGGG CESGSWAFNL NPDQGENDPG 300
MWISEPGVEL GLVAPVIINT GNNSTSNSDS QQISKLCNGG SSVENPKLQV TKSGEMVSFK 360
NGVENGFSSG QSRFMGEDSS NKKRSPVSNN EEGMLSFTSV SVLPRPAKSG DSNHSDLEAS 420
VVKEAESNRT VVEPEKKPRK RGRKPANGRE EPLNHVEAER QRREKLNQRF YSLRAVVPNV 480
SKMDKASLLG DAISYINELK SKLLKAESDK EDKRNHPGAK FMEALKELDL EVNHASLSVV 540
NDLMIQQATV KMGNEFFTQD QLKVALMEKV GECS*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 435 | 443 | KKPRKRGRK |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor involved in jasmonic acid (JA) gene regulation. With MYC2 and MYC3, controls additively subsets of JA-dependent responses. Can form complexes with all known glucosinolate-related MYBs to regulate glucosinolate biosynthesis. Binds to the G-box (5'-CACGTG-3') of promoters. Activates multiple TIFY/JAZ promoters. {ECO:0000269|PubMed:21321051, ECO:0000269|PubMed:21335373, ECO:0000269|PubMed:23943862}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By UV treatment. Not induced by jasmonic acid. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:21335373}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AF251689 | 1e-162 | AF251689.1 Arabidopsis thaliana putative transcription factor BHLH4 (BHLH4) mRNA, complete cds. |
| GenBank | AK221507 | 1e-162 | AK221507.1 Arabidopsis thaliana mRNA for putative transcription factor BHLH4, complete cds, clone: RAFL07-57-K04. |
| GenBank | AL021889 | 1e-162 | AL021889.2 Arabidopsis thaliana DNA chromosome 4, BAC clone T6K21 (ESSA project). |
| GenBank | AL161547 | 1e-162 | AL161547.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 47. |
| GenBank | CP002687 | 1e-162 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Chico JM, et al.
Repression of Jasmonate-Dependent Defenses by Shade Involves Differential Regulation of Protein Stability of MYC Transcription Factors and Their JAZ Repressors in Arabidopsis.
Plant Cell, 2014. 26(5): p. 1967-1980
[PMID:24824488] - Gasperini D, et al.
Multilayered Organization of Jasmonate Signalling in the Regulation of Root Growth.
PLoS Genet., 2015. 11(6): p. e1005300
[PMID:26070206] - Qi T, et al.
Regulation of Jasmonate-Induced Leaf Senescence by Antagonism between bHLH Subgroup IIIe and IIId Factors in Arabidopsis.
Plant Cell, 2015. 27(6): p. 1634-49
[PMID:26071420] - de Torres Zabala M, et al.
Novel JAZ co-operativity and unexpected JA dynamics underpin Arabidopsis defence responses to Pseudomonas syringae infection.
New Phytol., 2016. 209(3): p. 1120-34
[PMID:26428397] - Yu J, et al.
JAZ7 negatively regulates dark-induced leaf senescence in Arabidopsis.
J. Exp. Bot., 2016. 67(3): p. 751-62
[PMID:26547795] - Chen X,Huang H,Qi T,Liu B,Song S
New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis.
Plant Signal Behav, 2016. 11(2): p. e1135280
[PMID:26829586] - Schmiesing A,Emonet A,Gouhier-Darimont C,Reymond P
Arabidopsis MYC Transcription Factors Are the Target of Hormonal Salicylic Acid/Jasmonic Acid Cross Talk in Response to Pieris brassicae Egg Extract.
Plant Physiol., 2016. 170(4): p. 2432-43
[PMID:26884488] - Thatcher LF, et al.
Characterization of a JAZ7 activation-tagged Arabidopsis mutant with increased susceptibility to the fungal pathogen Fusarium oxysporum.
J. Exp. Bot., 2016. 67(8): p. 2367-86
[PMID:26896849] - Gao C, et al.
MYC2, MYC3, and MYC4 function redundantly in seed storage protein accumulation in Arabidopsis.
Plant Physiol. Biochem., 2016. 108: p. 63-70
[PMID:27415132] - Gimenez-Ibanez S, et al.
JAZ2 controls stomata dynamics during bacterial invasion.
New Phytol., 2017. 213(3): p. 1378-1392
[PMID:28005270] - Lian TF,Xu YP,Li LF,Su XD
Crystal Structure of Tetrameric Arabidopsis MYC2 Reveals the Mechanism of Enhanced Interaction with DNA.
Cell Rep, 2017. 19(7): p. 1334-1342
[PMID:28514654] - Wang H, et al.
The bHLH Transcription Factors MYC2, MYC3, and MYC4 Are Required for Jasmonate-Mediated Inhibition of Flowering in Arabidopsis.
Mol Plant, 2017. 10(11): p. 1461-1464
[PMID:28827172] - Song S, et al.
MYC5 is Involved in Jasmonate-Regulated Plant Growth, Leaf Senescence and Defense Responses.
Plant Cell Physiol., 2017. 58(10): p. 1752-1763
[PMID:29017003] - Li B, et al.
Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
Plant Cell, 2018. 30(1): p. 178-195
[PMID:29317470] - Han X, et al.
Jasmonate Negatively Regulates Stomatal Development in Arabidopsis Cotyledons.
Plant Physiol., 2018. 176(4): p. 2871-2885
[PMID:29496884]
|
