PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g030530.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 564aa    MW: 62749.6 Da    PI: 5.967
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g030530.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like85.74.8e-27323376256
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     ++++WtpeLH++Fv+aveqL G+e+A+P++ilelmkv+ Lt+++v+SHLQkYR++
  Csa11g030530.1 323 KKVDWTPELHKKFVQAVEQL-GIEQAIPSRILELMKVNTLTRHNVASHLQKYRMH 376
                     689*****************.********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.13E-636119IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.3E-470119No hitNo description
PROSITE profilePS5129415.915319378IPR017930Myb domain
SuperFamilySSF466891.7E-18321379IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.0E-26321378IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-24323376IPR006447Myb domain, plants
PfamPF002496.4E-8325374IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MVITANDLSK WENFPKGLKV LLLLNGDDDG DGFSAAETRS KLESTDYIVT IFTDETEALS  60
AVFKNPESFH IAIVEVNTNA EKEGFKFLEA AKDLGAVEFL QKPLSPEKLK NIWQHVVHKA  120
FNDGGSKPVK ESVVSMLHLD TNMTIDEKDP APSTPQLKQV SRLGDCQENI NCSMENAFND  180
GGSKPVKESV VSMLHLDTNM TIDEKDPAPS TPQLKQVSRL GDCQENINCS MENVNSSTEK  240
DNMEDQDIGE SKSVDTTNRV LDDDKVVVKE ERGDSEKEEQ GETGDLESER TDSVNCHKKE  300
DDTKPVNKSS GTKNLSGSKT TRKKVDWTPE LHKKFVQAVE QLGIEQAIPS RILELMKVNT  360
LTRHNVASHL QKYRMHRKNS LPKDDHNQRW AHSRENQRPI QRNNNGFQQQ QRPVMAYPVW  420
GLPSIHHPPR AIPPLWPPPL HCAGQPPPWH WKPPYPTVNG NAWGCPVGPP ITGSYYTPNI  480
TAGGFQYTNG VETGFKMMPA TQPDEEMLDQ VVKEAISKPW MPLPLGLKPP SPESVLAELS  540
RQGIPAVPSS SSSFLINGSH RIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-16322378157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g030530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3857250.0AF385725.1 Arabidopsis thaliana AT4g18020/T6K21_200 mRNA, complete cds.
GenBankAY1439630.0AY143963.1 Arabidopsis thaliana At4g18020/T6K21_200 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010439912.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
RefseqXP_010439913.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
RefseqXP_010439915.10.0PREDICTED: two-component response regulator-like APRR2 isoform X2
SwissprotQ6LA430.0APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLR0F4Q40.0R0F4Q4_9BRAS; Uncharacterized protein
STRINGXP_010439912.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57462747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.60.0ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]