PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g029980.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 757aa    MW: 84749.6 Da    PI: 6.6047
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g029980.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.5e-18111161255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrd + ng   r++lg+f taeeAa a+++a+ +++g
  Csa11g029980.1 111 KYRGVRRRP-WGKFAAEIRDSTRNG--VRVWLGTFQTAEEAAMAYDKAAVRIRG 161
                     8********.**********44465..************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.9E-28110170IPR001471AP2/ERF domain
PROSITE profilePS5103222.721111170IPR001471AP2/ERF domain
PfamPF008471.7E-11111161IPR001471AP2/ERF domain
SMARTSM003806.5E-35111176IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-20111171IPR016177DNA-binding domain
CDDcd000186.44E-27111170No hitNo description
PRINTSPR003673.4E-10112123IPR001471AP2/ERF domain
PRINTSPR003673.4E-10135151IPR001471AP2/ERF domain
Gene3DG3DSA:1.10.275.102.6E-45364481IPR024083Fumarase/histidase, N-terminal
SuperFamilySSF485572.2E-79365717IPR008948L-Aspartase-like
PfamPF002064.9E-33377612IPR022761Fumarate lyase, N-terminal
Gene3DG3DSA:1.20.200.109.2E-36482610No hitNo description
PfamPF002061.0E-6606635IPR022761Fumarate lyase, N-terminal
Gene3DG3DSA:1.20.200.107.8E-28611716No hitNo description
PROSITE patternPS001630617626IPR020557Fumarate lyase, conserved site
PfamPF083281.9E-26654715IPR013539Adenylosuccinate lyase PurB, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006188Biological ProcessIMP biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004018Molecular FunctionN6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    Send to blast
MAFGNIQEPD GEILKNVWAN YIRKPQQTDK RSTGHVQEVS RTWEALPTID NIPEDSKEWL  60
PSLDTSMEAQ EWTEFLNAVT SFPNKTNHDP LTNPTINSCS LSSRASCKTR KYRGVRRRPW  120
GKFAAEIRDS TRNGVRVWLG TFQTAEEAAM AYDKAAVRIR GTQKANTNFQ LETVIKAMEM  180
DCAPNYYPIH SSNTSQPLRS GHEIGSRTEK EAIEAYDKVV DDGMVENHCT LGHPSTKDYT  240
EICGLLGSGE TWLRSRKRPR SDEDFMFQEV KMKKMVTEEE TLCDVFGLFE FEDLGTQFFF  300
SMALTNTKIP CLGLTPTTRS LLNPSKSVCL APRVSFSVSS TDSLKLTTSR KVIAMAGASS  360
RDLEMSNLTA LSPLDGRYWG KVNELASSMS EFGLIYFRVL VEIKWLLKLS NIPEVTEVPS  420
FSKEAQEYLQ GIIDGFSMDD ALEVKKIERV TNHDVKAVEY FLKQKCESHP EIAKVLEFFH  480
FACTSEDINN LSHALMLREA LSSVILPTMD ELIKSISLMA KSFAYVPMLS HTHGQAASPT  540
TLGKEMAIFA VRLSEERRYL SQTKIKGKFA GAVGNYNAHI SAYSNIDWPH VAEEFVTSLG  600
LTFNPYVTQI TKAGEIGSST MPHKVNPIDF ENSEGNLGIA NAQLAFLSMK LPISRMQRDL  660
TDSTVLRNMG VALGHSLLAF KSAIQGIGKL QVNEARLKEH LDHTWEVLAE PIQTVNFSTF  720
LVFNIDQVML PCIANSRNYY GPIKKGDEEI RCSRAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2pts_A1e-1413637151392Adenylosuccinate lyase
3gzh_A1e-14136471528418Adenylosuccinate lyase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g029980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0808670.0AY080867.1 Arabidopsis thaliana At1g36280 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010439854.10.0PREDICTED: uncharacterized protein LOC104723219 isoform X1
RefseqXP_010439855.10.0PREDICTED: uncharacterized protein LOC104723219 isoform X2
TrEMBLA0A3P6FPD50.0A0A3P6FPD5_BRAOL; Uncharacterized protein
STRINGBo1g019590.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM511824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.11e-146ERF family protein