PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g027850.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 796aa    MW: 90470 Da    PI: 7.7219
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g027850.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B384.59.4e-2713106189
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grse 89 
                     f  v t+sdv+k++rlvlp++ ae+h    ++++++++ l+++d++g+ W+++++y+++ g+yv+tkGW++Fvk+++L++gD+v F++  g+++
  Csa11g027850.1  13 FHIVVTSSDVGKLNRLVLPRQDAERHfrpySSNNQNGTLLSFQDKNGKMWRFRYSYWNTLGSYVMTKGWSRFVKEKKLEAGDMVSFERGlGDES 106
                     667889************************66777899*************************************************6544444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-337117IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-269103IPR015300DNA-binding pseudobarrel domain
CDDcd100171.33E-2211100No hitNo description
PROSITE profilePS5086314.18413117IPR003340B3 DNA binding domain
SMARTSM010191.9E-1813119IPR003340B3 DNA binding domain
PfamPF023624.7E-2413107IPR003340B3 DNA binding domain
PROSITE profilePS5169711.284167262IPR006936ALOG domain
SuperFamilySSF522006.02E-9301387IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF015821.5E-7302389IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF525403.98E-7422539IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF520477.38E-27544784No hitNo description
Gene3DG3DSA:3.80.10.103.3E-24550766IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM003672.3618643IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM00367680664690IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM0036764755780IPR006553Leucine-rich repeat, cysteine-containing subtype
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 796 aa     Download sequence    Send to blast
MMTVPAPKKE HMFHIVVTSS DVGKLNRLVL PRQDAERHFR PYSSNNQNGT LLSFQDKNGK  60
MWRFRYSYWN TLGSYVMTKG WSRFVKEKKL EAGDMVSFER GLGDESERWK LYIDWSHRRD  120
MSLVQSHQFG DFGYKNFNFG TPSQYSNRFH TEGKAFSGEG STITTTTTES ESTVDCNAFR  180
SFLRTHGLTL SGCKAKDIID FLCVQKDLGD SNALVGRLSA ACERSGIKPK DNPFRSLAVI  240
RYLQMVRRIS GETECILAFS CNDILDVEET SFIRSILTEL QEQEVTPWTF NLSGRGNLDL  300
EMFYRCSVVI MVLSNTSARS SHFLDNLVAI MEHWKAKDLV VIPVYFMVTL SDLEDQFELV  360
QLQYRKYVQA DRVQKWKAAI AELASIGGHL WTYGTQFILA KEVVRSACLR LYLKDSDNLV  420
RILAFLDHPQ PSDVEIEGIW GMAGIVSQSK GLRHIRDDFF SKVFGEEKLS IGACETKSSF  480
MRDWFQNKAI LVVLDDVSNA RDAEYVVGGF GWFSHGHRII LTSRRKQVLI QCKGTEAIEG  540
ISLDASDLTC ELTPTVFGKM HRLRLLKFYC STSENQCKLS LPQGLDTLPD ELRLLHWENY  600
PLKNLPQKFN PENLVENLGK LKKINLSHSR NLTDILMLSE ALNLEHIDLE GCKSLFDVST  660
IPRCGKLISL NMKDCSHLRS LPGMVDLTSL KLLNISGCSE IEEIKDFAPN LTELYLAGTA  720
IRELPKSIEN LTELGTLDLE NCRRLQQLPF GIENLRCIVE LNLSGCTSLG LKGMETLVRS  780
PYPLLSLFPL RKRKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-4191184113B3 domain-containing transcription factor NGA1
5os9_B2e-4191184113B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDisease resistance protein that cooperates with RPP2B to confer resistance to Hyaloperonospora parasitica isolate Cala2. {ECO:0000269|PubMed:15165183}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g027850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013672702.11e-139probable WRKY transcription factor 19 isoform X2
RefseqXP_013672703.11e-139probable WRKY transcription factor 19 isoform X1
SwissprotF4JT781e-123RPP2A_ARATH; Disease resistance protein RPP2A
TrEMBLA0A1J3KBA61e-158A0A1J3KBA6_NOCCA; Putative WRKY transcription factor 19
STRINGXP_010436480.11e-163(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5462920
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.11e-68B3 family protein
Publications ? help Back to Top
  1. Meyers BC,Morgante M,Michelmore RW
    TIR-X and TIR-NBS proteins: two new families related to disease resistance TIR-NBS-LRR proteins encoded in Arabidopsis and other plant genomes.
    Plant J., 2002. 32(1): p. 77-92
    [PMID:12366802]
  2. Sinapidou E, et al.
    Two TIR:NB:LRR genes are required to specify resistance to Peronospora parasitica isolate Cala2 in Arabidopsis.
    Plant J., 2004. 38(6): p. 898-909
    [PMID:15165183]
  3. Kempema LA,Cui X,Holzer FM,Walling LL
    Arabidopsis transcriptome changes in response to phloem-feeding silverleaf whitefly nymphs. Similarities and distinctions in responses to aphids.
    Plant Physiol., 2007. 143(2): p. 849-65
    [PMID:17189325]