PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g026250.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family FAR1
Protein Properties Length: 800aa    MW: 92917.8 Da    PI: 6.711
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g026250.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR187.71.7e-2734135190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 
                     +fY+eYA++vGF++ +++s++s+++g++++++fvC+++g+++++ ++            +++ r +r++++t+Cka+l+vk+++dg+w++ +l++
  Csa11g026250.1  34 EFYKEYANSVGFTTIIKASRRSRMTGKFIDAKFVCTRYGSKKTDVDNglgidgfnipqaRKRGRINRSSSKTDCKACLHVKRRQDGRWVIRSLVT 128
                     6*******************************************999*********998889999****************************** PP

            FAR1  84 eHnHela 90 
                     eHnHe++
  Csa11g026250.1 129 EHNHEVF 135
                     ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-2534135IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.089390426IPR007527Zinc finger, SWIM-type
SMARTSM005751.5E-6401428IPR006564Zinc finger, PMZ-type
PfamPF044341.1E-5403424IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 800 aa     Download sequence    Send to blast
MLSGECSNVQ LDDHRTNLEI NEGREFESKE EAFEFYKEYA NSVGFTTIIK ASRRSRMTGK  60
FIDAKFVCTR YGSKKTDVDN GLGIDGFNIP QARKRGRINR SSSKTDCKAC LHVKRRQDGR  120
WVIRSLVTEH NHEVFTGQAK SLRELGGRKK LEKQNGAIVK EAMHGCQPKV ILTRHDQTLK  180
EAVSEVFPSS RHCFYMWDTF GQMPEKLGHV MRQEKSFMDE INDAIYGSWK NDEFEKNWWE  240
VVDRFHMRDN AWLQSLYEDR EHWVPVYMKD VSLAGMCTAQ RSDSVNSVFD KYIQRKTTLK  300
SFLDQYKTMI QERYEEEEKA EIETLYKQPG LKSPSPFGKQ MAEVYTREMF KKFQVEVLGG  360
VACHPKKESQ EDEVNKKTFR VQDYEQNRAF LVGWDSESSE VVCSCRLFEF KGFLCRHAMI  420
VLQMSGEPSI PSQYVLKRWT KDAKSRIFME LDQIDVESTK AQRYMDLCLR SLKLSEEASL  480
SEESYNAVIN VLNEALRKCE NKSNLIQNVE ESESVIAQDL PIHEEQNNTY EMNKDDNVAD  540
TGQEHSLQEV WKVTALQEQR NRYSILDDYL SAQHMSHEMV YENSHLQYKK VQYPNLVPLC  600
DPQGQINPMA SNRNGYCTVH PNIQSLGQSI THQRLYGTEQ LSFRPEAMYE RLQDMVVTLF  660
DVNGLYIEEI SNIFYCSQIQ NNGFVGEKGL IALRPWRGCV RSKEGCTKHV RCTSKFCSFT  720
CKEVEHVLEH EGDLSSITRN CSVDDSRSKI SEHVGDLSLH PCGDPEKIFP LKKRSGRRIE  780
FYDSDEFEET FAYRPRRRA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146153GRKKLEKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g026250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7634120.0AY763412.1 Arabidopsis thaliana FAR1-related 1 protein (FRS1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010439627.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 1 isoform X1
RefseqXP_019087820.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 1 isoform X1
SwissprotQ5UBY20.0FRS1_ARATH; Protein FAR1-RELATED SEQUENCE 1
TrEMBLR0GY700.0R0GY70_9BRAS; Uncharacterized protein
STRINGXP_010439627.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19990.10.0FAR1-related sequence 1