PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g025540.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 189aa    MW: 21309.3 Da    PI: 8.1155
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g025540.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.3e-121262355
                    HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                    r+ + +E++RR +++s ++eL +llP+ +   + + l+  + L +A +YIk+Lq
  Csa11g025540.1 12 RSRKTVEKNRRMQMKSLYSELTSLLPHhS---SREPLTLPDQLDEAANYIKKLQ 62
                    67899**********************44...7777*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.928961IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.84E-61266No hitNo description
PfamPF000101.5E-71262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-101275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-91376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00281567IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MEPSHSNTAQ SRSRKTVEKN RRMQMKSLYS ELTSLLPHHS SREPLTLPDQ LDEAANYIKK  60
LQVNVEKKRE RKSKLVATAT SEKLNSAGSS LVASSVDVSV PRRLPRIEIQ ETGSIFHIFL  120
VTSLEHKFMF CEIVRVLTEE LGAEITHAGY SIVDDAVFHT LHCKVEECDY GARSQIPERL  180
EKFVNSVN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g025540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936861e-170AB493686.1 Arabidopsis thaliana At4g20970 mRNA for hypothetical protein, partial cds, clone: RAAt4g20970.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010439537.11e-137PREDICTED: transcription factor bHLH36-like
SwissprotF4JIJ71e-113BH162_ARATH; Transcription factor bHLH162
TrEMBLR0F6L91e-114R0F6L9_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010439537.11e-136(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-114bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]