 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Csa11g024840.2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
B3 |
| Protein Properties |
Length: 447aa MW: 50054.3 Da PI: 6.5165 |
| Description |
B3 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa11g024840.2 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 37.4 | 4.5e-12 | 16 | 97 | 1 | 79 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79
f+k l+ sd+++ gr+vlpkk+ae++ +++++e++ l++ d+ g++W + +++ ++ks+ yvl+ G ++ +L++gD+
Csa11g024840.2 16 FEKMLSASDTGRVGRMVLPKKCAEAFlpQISNPEGVPLKILDPMGKEWIFHFRFwaTNKSRIYVLE-GVGPCIQSLQLQTGDT 97
89**************************88888999****************99666666669988.***************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 447 aa
Download sequence Send
to blast |
MNGFRDRSES VVTHLFEKML SASDTGRVGR MVLPKKCAEA FLPQISNPEG VPLKILDPMG 60
KEWIFHFRFW ATNKSRIYVL EGVGPCIQSL QLQTGDTGIS AYAWELISIF FLVIFNRLDP 120
ERKLMLGFRK ASVAQSSDQE TDSTNSNRDT CTNRDAEPAD MHSLSKVKKS AYITKETPGV 180
EISSSKKKSS MMITRGKRRK VEKGDHIELK LTWEEVQGFL LPPPNFTPSK VMIEDSEFEE 240
YEDAPIIGKP IDDTGFRSTC TPDQEPVAEQ QDEETMEDVE GLLMSPKTTK KHPRHRNDCT 300
CIVCIQSPSG AGTKHDRCCS CAVSEAGKRR RRSLLLRREK QQMGKEDNAH TELEQPNSDN 360
ELRQSANNSE NHEGLASPLK GQLDLNFKPE KDGESLPGSN KTTKKKTLHH DDTVKSSFKS 420
PSSSTAHSQI NKEEEEEIAE TTTSSI*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 6fas_A | 1e-40 | 12 | 132 | 5 | 110 | B3 domain-containing transcription repressor VAL1 |
| 6fas_B | 1e-40 | 12 | 132 | 5 | 110 | B3 domain-containing transcription repressor VAL1 |
| Search in ModeBase |
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 185 | 199 | KKKSSMMITRGKRRK |
| 2 | 333 | 340 | LLLRREKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | May be involved in plant development. {ECO:0000269|PubMed:17158584}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AL022603 | 2e-79 | AL022603.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F18E5 (ESSAII project). |
| GenBank | AL161555 | 2e-79 | AL161555.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 55. |
| GenBank | CP002687 | 2e-79 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
