PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g024840.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 447aa    MW: 50054.3 Da    PI: 6.5165
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g024840.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.44.5e-121697179
                    EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79
                    f+k l+ sd+++ gr+vlpkk+ae++  +++++e++ l++ d+ g++W + +++  ++ks+ yvl+ G     ++ +L++gD+
  Csa11g024840.2 16 FEKMLSASDTGRVGRMVLPKKCAEAFlpQISNPEGVPLKILDPMGKEWIFHFRFwaTNKSRIYVLE-GVGPCIQSLQLQTGDT 97
                    89**************************88888999****************99666666669988.***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-216140IPR015300DNA-binding pseudobarrel domain
CDDcd100176.32E-1514130No hitNo description
SuperFamilySSF1019361.57E-131497IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.0E-716132IPR003340B3 DNA binding domain
PROSITE profilePS508638.65616118IPR003340B3 DNA binding domain
PfamPF023624.4E-91697IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MNGFRDRSES VVTHLFEKML SASDTGRVGR MVLPKKCAEA FLPQISNPEG VPLKILDPMG  60
KEWIFHFRFW ATNKSRIYVL EGVGPCIQSL QLQTGDTGIS AYAWELISIF FLVIFNRLDP  120
ERKLMLGFRK ASVAQSSDQE TDSTNSNRDT CTNRDAEPAD MHSLSKVKKS AYITKETPGV  180
EISSSKKKSS MMITRGKRRK VEKGDHIELK LTWEEVQGFL LPPPNFTPSK VMIEDSEFEE  240
YEDAPIIGKP IDDTGFRSTC TPDQEPVAEQ QDEETMEDVE GLLMSPKTTK KHPRHRNDCT  300
CIVCIQSPSG AGTKHDRCCS CAVSEAGKRR RRSLLLRREK QQMGKEDNAH TELEQPNSDN  360
ELRQSANNSE NHEGLASPLK GQLDLNFKPE KDGESLPGSN KTTKKKTLHH DDTVKSSFKS  420
PSSSTAHSQI NKEEEEEIAE TTTSSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6fas_A1e-40121325110B3 domain-containing transcription repressor VAL1
6fas_B1e-40121325110B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185199KKKSSMMITRGKRRK
2333340LLLRREKQ
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in plant development. {ECO:0000269|PubMed:17158584}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g024840.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0226032e-79AL022603.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F18E5 (ESSAII project).
GenBankAL1615552e-79AL161555.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 55.
GenBankCP0026872e-79CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010439457.10.0PREDICTED: B3 domain-containing transcription factor VAL3-like isoform X2
SwissprotO654201e-166VAL3_ARATH; B3 domain-containing transcription factor VAL3
TrEMBLR0GUV90.0R0GUV9_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010439456.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.11e-157VP1/ABI3-like 3